Clostridium gelidum: psyc5s11_21660
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Entry
psyc5s11_21660 CDS
T08447
Symbol
dbpA_2
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgel
Clostridium gelidum
Pathway
cgel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
psyc5s11_21660 (dbpA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgel03019
]
psyc5s11_21660 (dbpA_2)
03009 Ribosome biogenesis [BR:
cgel03009
]
psyc5s11_21660 (dbpA_2)
Enzymes [BR:
cgel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
psyc5s11_21660 (dbpA_2)
Messenger RNA biogenesis [BR:
cgel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
psyc5s11_21660 (dbpA_2)
Ribosome biogenesis [BR:
cgel03009
]
Prokaryotic type
rRNA helicases
psyc5s11_21660 (dbpA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
GTP_EFTU_D2
NAT10_TcmA_helicase
SWI2_SNF2
AAA_19
GlcNAc-1_reg
Motif
Other DBs
NCBI-ProteinID:
BCZ46099
UniProt:
A0ABM7T4H0
LinkDB
All DBs
Position
2493201..2494643
Genome browser
AA seq
480 aa
AA seq
DB search
MNSEFSKFKIGEELLKSIEGLGYKTPSEVQEKVIPEILKNNDVIVKSQTGSGKTAAFGIP
LCEKIDWEENSPQVLVLTPTRELAVQVSEDISNIGRFKRIKAIAVFGKEPITDQIRKLKQ
KTHIVVGTPGRVFDHIDKGSLDLSKIKYFVIDEADEMLNMGFIDQVEDIIKKLPRKKVTM
LFSATMPDEIKNLSKKHMNKPVDITIESQKLITDNIEHTLYYVNYEKKLENLNSILIHEK
PETAIIFARTQENVDKVFEFLKTKRYSVNKIHGGMLQKERLSTMESYRRGDFRLLVATDV
ASRGIDIEGITHVINYELPVEKEAYVHRIGRCGRAGAKGKAITFCVKEKDNLLSQIEELI
GFKLPVCYIPGKEQIEEEREESTELLQSKPKKKTEKAKIINTNITKIYLNGGKKKKLRAG
DIVGAICNIEGLSADDIGIIDIQDSVSYVDILNGKGKKVVDELKNMTIKGKKITIEKAYK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgaatttagtaaatttaaaataggagaggaacttttgaagtccatagaaggt
cttggatataagactccttcagaagttcaagaaaaggtaataccagagattcttaaaaat
aatgatgttatagttaagtcacaaacaggaagcggaaagacagcagcctttggtattcct
ttatgtgaaaaaatagattgggaagaaaatagtcctcaagtattagttttgacaccaaca
agagaacttgcagttcaagtaagtgaagatatatctaatataggaagatttaaaagaatt
aaagctattgcagtttttggtaaagagccaataacagatcaaataagaaaattgaaacaa
aagactcatatagtagttggaactccaggaagagtttttgatcacattgataaaggaagc
cttgatctatcaaaaataaaatattttgttatagatgaagctgatgaaatgcttaatatg
ggatttatagatcaagttgaagatataattaagaaacttccaaggaaaaaggttactatg
ctattttcagcaacaatgccagatgaaattaaaaatttatccaagaagcatatgaataaa
ccagtagatattactattgaaagtcaaaaactcattacagataatatagaacacacttta
tattatgtgaattatgaaaaaaagttagaaaacttaaatagtatattaatacatgaaaaa
cctgaaactgctattatatttgctagaactcaagaaaatgtagataaagtatttgaattt
ttaaagacaaaaagatattcggttaataaaattcatggtggaatgcttcaaaaagaaaga
cttagcactatggaaagctatagacgtggagattttagattgcttgttgcaacagatgta
gcttcaagaggaattgatattgaaggtataactcatgtaataaattatgagcttccagta
gaaaaagaagcttatgtacatagaataggaagatgcggacgtgcaggcgcaaaggggaaa
gctataactttttgtgttaaggagaaagacaatcttttaagtcaaattgaagaacttata
ggttttaaacttccagtttgttatattccaggtaaagagcaaatagaagaagaaagagaa
gaaagcactgaattacttcaaagtaaacctaagaaaaaaacagaaaaagctaaaattata
aatactaacataactaaaatttatttaaatggcggaaagaaaaagaaactccgagctgga
gatatagtgggagctatctgtaatatagaaggattaagtgcagatgatattggaataatt
gatatacaagattcagtatcttatgtagatatattaaatggaaaaggaaaaaaagttgta
gatgaattaaaaaatatgactataaaaggtaagaaaataactatagaaaaagcatataaa
taa
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