Clostridium gelidum: psyc5s11_30880
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Entry
psyc5s11_30880 CDS
T08447
Symbol
spoVD_1
Name
(GenBank) stage V sporulation protein D
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
cgel
Clostridium gelidum
Pathway
cgel00550
Peptidoglycan biosynthesis
cgel01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
psyc5s11_30880 (spoVD_1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cgel01011
]
psyc5s11_30880 (spoVD_1)
Peptidoglycan biosynthesis and degradation proteins [BR:
cgel01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
psyc5s11_30880 (spoVD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PASTA
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
BCZ47021
LinkDB
All DBs
Position
complement(3401304..3403550)
Genome browser
AA seq
748 aa
AA seq
DB search
MRKRKYINKAKMRQRMIVTAFSLTVIFSILIIRLSYIMIVKRADYAGKAEEQWTSELKID
AKRGRILDRYGNELAVSANVYRIDFDLKSLSAYLKRPLKSIPIKEIDHMKSVGIPVPTGD
GGLKTDDIAPVIAKVLDMDVSEIEKKLPSGADAGYVTVARKIEKDVADKIKEFNINGVVV
SPDTKRYYPNNNFLSQALGSTDSDGKGLTGLELQYNSYLSGIPGMKIAELDKNNRDLPYT
SSQYTSSINGKDVTTTIDENIQNIAENIAKRCYENNKAKAVSILIMDPKTGEVLAMVNKP
DFDPNNPRDGAEKFDGKDNNEKIQKMWRNRLVNDTFEPGSIFKVITAISGLENNIVNKDT
QFVDNGSISIGGITVKDAEQQNRLQNLLQIIQNSSNVGFVELGKMIGKEKLCESIDKFGF
GKVSGIDLPGEAPGIVKPVNKVSIADLATISFGQTNTLNSVQYMAAFDAIANGGTLIQPH
IMKEVTHNDENNVNIVDEVFKPKTSIVASPEKTAELRTYLEGVVTGGSGTGTFIEGYHIG
GKTGTAEKVVDGKYGEGKYISSFVGMAPSSDPKVTIMITVDEPRNGEYYAAQVAVPYAKS
LFTDIFNYLNSKFSDENSKKITKDVVIPEVRNMKVADAKKILKDARLDCNIDGDGEKVVN
MTPYPGSSVKEDSKITLYTSSDATYNNDVVMPNVRGYSKEDATYLLKSIGIVSTFDGNGA
VSEQDIDQGEVISKGTTVKLTLSSDYKD
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaagagaaagtatataaataaagcaaaaatgcgtcagagaatgatagttacagct
ttttcattaacggttattttttcaatattaataattaggctatcttatataatgatagtt
aaaagagcagattatgcaggaaaagcagaagaacaatggacaagtgaattgaaaatagat
gctaaaagaggaagaattctagatagatacggaaatgaacttgctgtgtctgctaatgtt
tacaggatagatttcgatttaaaatcgttaagtgcatatttgaaaagaccattaaaatcc
attccaatcaaagaaattgatcatatgaaaagtgtaggcattccagtgcctacaggagat
ggtgggctaaaaactgatgatattgcgcctgtaattgccaaggtattagatatggatgta
tcagaaatagaaaaaaaacttccaagtggagcagatgcaggatatgttactgtggcacgg
aaaatagaaaaagatgtagcagataaaataaaagaatttaatataaatggagttgtagtt
tcaccagatacaaaaagatattatcccaataataactttttatcacaggctctaggaagt
actgattctgacggtaaaggcttaactggattagaacttcaatataattcatatttatca
ggaattcctggaatgaaaattgcagaacttgataaaaataatagggacttgccctataca
agttcacagtacacatcctctataaatggtaaagatgttactactactattgatgaaaat
attcaaaatattgctgagaatatagctaagcggtgttatgaaaataataaagctaaagca
gtttcaatactaataatggatcctaaaacaggagaagtattagctatggttaacaaaccg
gattttgatcctaataatccacgtgatggtgcagaaaaatttgatggaaaagataataat
gaaaaaatacaaaaaatgtggaggaatagattagtaaatgatacctttgaaccaggatct
atatttaaagtaattactgctatatcaggtctagaaaataatattgttaataaagataca
caatttgtagataatggatcaatatcaataggagggattacggtaaaggacgcggaacaa
caaaatagacttcaaaatttacttcaaattattcaaaattcatcaaatgtagggtttgta
gaattagggaaaatgattggtaaagaaaagttatgtgaatctattgataaattcggattt
ggaaaggtaagtggaattgatttgccaggtgaggcgcctggaattgtaaaaccagttaat
aaagtttcaattgcagaccttgcaacaatatcatttggtcaaactaacacattaaattcg
gttcaatatatggctgcatttgatgctattgccaatggaggaacacttattcagccacat
ataatgaaagaagtgactcataatgacgaaaataatgtcaatattgtagatgaagttttt
aaacctaaaacttctattgtagcaagtccggaaaagacagcagaacttagaacttatctt
gaaggagttgtaacagggggatcaggaacagggacttttattgaaggatatcatataggt
ggcaaaactggtacagctgaaaaggttgttgacggcaaatatggagaaggcaagtatata
tcttcattcgttggaatggctccatctagtgatccaaaagttactattatgataactgtt
gatgaacctagaaatggtgagtattatgcagcacaagtagcagtaccatatgctaaatca
ttatttactgatatttttaactatctaaatagcaagttttctgatgaaaatagtaaaaaa
attactaaagatgttgttattccagaagttaggaatatgaaagttgcagatgctaagaaa
atattaaaagatgcaagattagattgtaatatagatggagatggagaaaaagtagtaaat
atgactccatatccaggttcctcagtaaaggaagattccaaaataactctttacacaagt
agtgatgcgacttataataatgatgttgtaatgccaaatgttaggggatattcaaaagaa
gatgcaacttatttgttaaaaagtattggaatagtatctacatttgatgggaatggagcg
gtttcagaacaggatattgatcaaggggaagttataagtaaaggaacaactgttaaattg
actttaagctcagattataaagattaa
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