Clostridium gelidum: psyc5s11_37220
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Entry
psyc5s11_37220 CDS
T08447
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cgel
Clostridium gelidum
Pathway
cgel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
psyc5s11_37220 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgel03019
]
psyc5s11_37220 (rhlE_2)
Enzymes [BR:
cgel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
psyc5s11_37220 (rhlE_2)
Messenger RNA biogenesis [BR:
cgel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
psyc5s11_37220 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
HP0268
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCZ47655
UniProt:
A0ABN6IZW7
LinkDB
All DBs
Position
complement(4052232..4053707)
Genome browser
AA seq
491 aa
AA seq
DB search
MKFEELNIIEPILKALKDENYKEPSKIQEEAIPSILLGKDLLGCAQTGTGKTAAFAIPTL
QLLHNSNKIAKKKKIQSLILTPTRELAIQIYDNFQSYGKNLNLKSAVIFGGVSQKPQEEV
LRKGVDILIATPGRLNDLVNQKIIDLSEIEIFILDEADRMLDMGFINDVKKIIRYIPKKR
QTLFFSATMPSEIKKLVSTLLVDPVVVEVTPVSSTVDKIKQSLYYVDKANKRKLLISLLK
TDEIKSALVFTRTKSDANRLVKYLEDAQIGAKAIHGNKSQNARQEALQSFKDKKIQVLIA
TDIAARGIDIDELSHVINYGLPNIPETYVHRIGRTGRAGQRGIAISFSDVDEVPFVRDIE
KLIKKKIDVVEGHKFPMVNLTPSPKTKATGNRPRTGHNTRVKGTGTQSTSKNTTAGNTNA
NKTAATGSENTRKAVATGNTNKAKTTTSGNKNTFKSTATGNQNTFRTGATANPNTRTAGA
KKNTTRRTSFK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaattaaacataatagaaccaatattaaaagcattaaaagatgaaaat
tataaagagcctagtaaaatacaggaagaagcaattccatcgattttacttggaaaagat
ttacttggatgtgcacaaacaggaacaggtaaaactgctgcttttgcaatacctacatta
cagttattacataattcaaataagattgcaaagaagaaaaaaatacaatcgctaattttg
acaccgactagagaattagcaatacaaatatatgataattttcaatcatatggtaagaat
ttgaatttaaagtctgcagtaatatttggtggggtatcacaaaaaccacaagaagaagta
ttaagaaaaggtgtagatatattaatagcaacaccaggaagattgaatgatttagtaaat
caaaaaattatagatttaagtgaaatagagatattcatattagatgaagctgatagaatg
ttagatatgggatttataaatgacgtaaaaaaaattataagatatattcctaaaaaaaga
caaacactattcttttcagcaactatgcctagcgaaatcaaaaaattagtaagcacactt
ttagtagacccagttgtagtagaggtaacacctgtatcatcaactgttgataagattaaa
caatcactttactatgttgacaaagctaataagagaaaattattaataagcttattaaaa
acagatgaaataaaatcagcattagttttcacaagaactaaaagtgatgctaatagatta
gtaaagtatttagaagatgcacaaataggagcaaaagcaattcatgggaataagtctcaa
aatgctagacaagaagcacttcaaagctttaaagataaaaaaatacaagttttaatagct
acagatatagcagcaagaggaattgacattgatgaattgtcacatgtaattaattatggt
ttacctaatataccagaaacttatgtacatagaattggaagaacaggtagagccgggcaa
cgtggaatcgctatatcatttagtgatgtagatgaagtaccttttgtaagagatatagag
aaattgattaaaaagaaaatagatgtggttgaaggacataaatttccaatggtaaattta
acaccaagccctaagactaaagcaacaggaaatagaccaagaactgggcataatactaga
gttaaaggaacaggaactcaaagtacatctaaaaatacaactgcaggaaatacaaatgca
aataagactgcagcaacaggaagtgaaaatacacgtaaagctgtagcaacaggaaataca
aacaaagctaaaacaacaacatcaggaaataaaaatacatttaaatctacagctacagga
aatcaaaatacattcagaactggagcaacagcaaacccaaatacacgtacagctggagca
aagaagaatacaactagaagaacaagttttaaataa
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