Clostridium gelidum: psyc5s11_40900
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Entry
psyc5s11_40900 CDS
T08447
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cgel
Clostridium gelidum
Pathway
cgel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
psyc5s11_40900 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgel03019
]
psyc5s11_40900 (pnp)
03016 Transfer RNA biogenesis [BR:
cgel03016
]
psyc5s11_40900 (pnp)
Enzymes [BR:
cgel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
psyc5s11_40900 (pnp)
Messenger RNA biogenesis [BR:
cgel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
psyc5s11_40900 (pnp)
Transfer RNA biogenesis [BR:
cgel03016
]
Prokaryotic type
tRNA degradation factors
psyc5s11_40900 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
KH_N4BP1_2nd
KH_2
S1_RRP5
Gluconate_2-dh3
Motif
Other DBs
NCBI-ProteinID:
BCZ48023
UniProt:
A0ABM7T9G3
LinkDB
All DBs
Position
complement(4458677..4460782)
Genome browser
AA seq
701 aa
AA seq
DB search
MNNVLTTEIAGRVLKVEFGKVGMLSNAATFTSYGDTVILTNVNASEQPRQGIDFFPLSVE
YEERLYAVGKIPGGFIKREARPSERAILNGRAVDRTLRPLFPHGYRNDVQVVNTIVSVEN
DNLPEILAINAASLALCLSSIPYTIPAAAVQVGIIDGKFVVNPDTEARGKSTLFLTVCTT
KERVMMVEAGGNEIPEDTMIDAIKYGFDECQKIIAFQEEAVAKFGKTKDVPVLYTVDAEL
EKDIKEFAQDMVKEAMYIMDKDPRNAAIDAVNEKVKAEFGEKYADKSGDIKEVLYTMQKK
VVRNMLLKDKRRPDGRAFDQVRPLACEVGILPRTHGTGLFTRGLTQVMTVATLGSISEIQ
ILDGIDEAKSKRYMHHYNFPGYSVGEVKPLRGPGRREIGHGALAERALLPLLPSEEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPLKRPVAGIAMGLITSDDLSEEAVITDI
QGIEDFFGDMDFKVAGTTEGITSIQVDTKLHGFSFNVVENAIRDARKARLTIIDKINECM
ASPREDVSLYAPKTQTMSINPDKIRDVIGAGGKVINKIIQDTGVKIDIKEDGTVFVSSTD
HEGVTKALKIIEALTKEFKAGEVYLGKVTKITTFGAFVEILPGKEGLVHISKLAKERVNK
VEDVVSIGDEILVKVTEVDNQGRINLSRKDALEEQENKEAK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaataacgttctaacgactgaaatcgctggaagagtattgaaagttgaattcggaaaa
gtaggtatgttatcaaacgcagcaacatttactagctatggagacacagtaattttaact
aatgttaatgcatcagaacaaccacgacaaggaatagatttctttcctctaagcgttgaa
tatgaagaaagattatatgcagtaggtaaaattccaggtggatttattaagagagaagct
agaccgtcagaaagagctatattaaatggtagagctgttgatagaactctaagacctcta
tttcctcacggatacagaaatgatgttcaagtagttaatacaatagtatctgttgaaaat
gacaatttacctgaaatattagcaattaatgcagcgtcacttgcattatgtctttcaagt
attccatacacaattccagctgctgcagtgcaagtgggaattatagatggtaaatttgtt
gtaaatccagatactgaagcacgtgggaagagtactctttttttaacagtatgtactaca
aaagaaagagtaatgatggttgaagctggtggaaacgaaataccagaagatactatgata
gatgctattaaatatggttttgatgaatgtcaaaagattattgcattccaagaagaagct
gtagctaaatttggaaagacaaaggatgtaccagtattatatactgtagatgcagaactt
gaaaaagatattaaagaatttgctcaagatatggttaaagaagcaatgtatatcatggat
aaggatccaagaaatgcagctatagatgcagtaaatgaaaaagttaaagcagaattcggt
gaaaaatatgctgataaatcaggggatataaaagaagttctttatacaatgcaaaagaaa
gttgtaagaaacatgcttttaaaggataagagaagacctgatggaagagcatttgaccaa
gttagacctttggcttgcgaagtaggaattttacctagaacacatggtacaggattattt
acaagaggattaactcaagtaatgactgttgcaacacttggatcaattagcgaaattcaa
atattagatggaatagatgaagcaaaatctaaaagatatatgcatcattacaacttccca
ggatatagtgttggagaagtaaaacctttaagaggacctggtagacgtgaaattggtcat
ggagcattagcagaaagagctcttttaccgctgcttccatcagaagaagaattcccatat
actattagattagtatcagaagttttaagttcaaatggatcaacttctcaagcatcagtt
tgtggttcgacattagcattattagatgcaggtgtacctcttaaaagaccagttgcaggt
attgcaatgggattaataacatcagatgatctatcagaagaagcggtaataactgatatt
caaggaatagaagatttcttcggagatatggactttaaggtagcaggaacaacagaaggt
ataacatcaattcaagtggatactaagcttcatggatttagttttaatgtagtagaaaat
gcaattcgcgatgcaagaaaagcaagacttactataattgataaaataaatgaatgtatg
gcatctcctagagaagatgtttcattatatgcaccaaagactcaaacaatgagcataaat
ccagataagataagagatgtaattggagctggtggtaaggttataaacaagataatacaa
gatacaggcgttaaaattgacataaaagaagatggaactgtatttgtaagttcaactgac
cacgaaggtgttacaaaagctcttaaaataatagaagctttaactaaagagtttaaagct
ggagaagtttatttgggaaaagttactaagataactacatttggagcatttgttgaaatt
ttacctggaaaagaaggcttagttcatatttctaagttagctaaagaaagagtaaataaa
gtagaagatgtagtatcaattggagatgaaattttagttaaggttacagaagttgataac
caaggtagaataaatctttcaagaaaagatgctttagaagaacaagaaaataaagaagct
aaataa
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