Clostridium gelidum: psyc5s11_44400
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Entry
psyc5s11_44400 CDS
T08447
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cgel
Clostridium gelidum
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgel03400
]
psyc5s11_44400 (sbcC)
DNA repair and recombination proteins [BR:
cgel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
psyc5s11_44400 (sbcC)
Archaeal homologous recombinant proteins
psyc5s11_44400 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
Crescentin
AAA_27
SMC_N
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BCZ48373
LinkDB
All DBs
Position
complement(4821720..4825214)
Genome browser
AA seq
1164 aa
AA seq
DB search
MKPIKLKIKGLNSFIEEQTIDFDKLTDRGFFGIFGPTGSGKSTILDGITLALYGNVSRKS
SNYINTNCDRLNVYFEFQISGAETKRYAIDREFRRKKDESINSGKCKIVDITNPEDEEVL
ADGVKTINKIVEEIIGLNLEDFTRTVVLPQGKFSEFLKLEGKDRRDMLERLFNLQQYGDN
LSRKLNTKIGKEKTDNNILIGQLSGYNDISEDKLKEKDEILEELKNKLGILKSELEVIEK
NYKENEEIWKLQLELLEYKDKEKILKEKESEINEDIKKIKLGEAGAKVVPYIKAFENTIK
EFGKNETELDKLKLAIDNIKEEKEKIEKLWIMAKDNKENKLPQFIVEEQKVKDAIEEKKL
IDEIQNKINSLAVQIKELDTRSKESQAELLKIETEIKDKNKSIKEDEKNCDDLKTDEKLK
EKVQEGIIIEEKVSDLKSIVTKDQEKKVSLEKENSETILKGKALKDIIEKAKKDLEDNEK
QYDHLLKNSPGEQKDLVNLNQLIVENDQKWKIYHKSNDDIKVSEAEIKSLNIEIVNAKEE
VKKQEEELEKIKNKQNEIIRENLAHKLREELNDGEICPVCGSTHHLKENIKIVDTVDLKD
IEDEIKSKENLIKVINNKVVQNETKVTNFNEKINVSKEEIKKLGTEFKEKPLEKLKDEFI
NLQNALENYTKEKERLEKSINKFKNEISIKTGEINELRAVVRTKQTQLVELENNIKLNSE
ELSVLQNKVSLLKSETSVDDFNKKNEEIKAIEKEIDKLAKVVKNNRELVEKSVRKREELN
SELTSIKEKLAKDNADLAGYEKNKEEKLQAIKNKVEDENDLDTLLNKVQKNIKNINDEFQ
VAENNKNKIEKEFTDNNEKLIATISKDKELSKRKKEQEAQLEVAIDSEGFNSLEEVKKNI
IGKDEINEYKENVDNYNNNIARVSGTIESLLKKKNGKEITKENYEQLKSLKNEKEKDVNY
VNENKIKIEEELNNIRLKLAEQKDLLEKKKKLEHKLALLSDLDKLFKGKKFVEFVATNKL
KYVSIEASKRLKEITHGNYGLEVDENGKFIIRDYKNGGAKRDATTLSGGETFLASLALAL
ALSAQIQLKGTAPLELFFLDEGFGTLDDELLEVVMSSLERIHNDKLKVGIISHVEAIKNR
VPVKLIITPAECGMGGSKVKIERS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcaagcttaagattaaaggattaaatagctttatagaagagcaaactata
gactttgataaattaactgatagaggattttttggtatatttggtcctacagggagtgga
aaatcaactatattagatggtataactttagctttatacggaaatgtatcaagaaaaagt
tctaattatataaatacaaattgtgatagattaaatgtatattttgaattccaaatatca
ggagctgaaactaaaaggtatgctatagacagggaatttagaagaaaaaaagatgagagc
ataaattctggaaagtgcaaaatagtggatataacaaatccagaggatgaagaagtttta
gcagatggtgttaaaactataaataaaatagttgaagaaataataggtctaaatttagaa
gactttacaagaactgttgtacttccacaaggaaaattcagtgagtttttaaagcttgag
ggcaaagataggcgagatatgcttgaaagactatttaatctgcaacaatatggagataat
ttgtctagaaagctaaatacgaagattggtaaagaaaaaactgataacaatattttaatt
ggacaattaagtggctacaatgatataagtgaagataaattaaaagaaaaagatgaaata
cttgaggaacttaagaataaattaggaattttaaaaagtgaattagaagtaattgaaaaa
aattataaggaaaatgaagaaatctggaaattacagttagaattattagaatacaaagat
aaagaaaaaatccttaaagaaaaggaatctgagataaatgaagatattaaaaaaataaaa
ttaggtgaagcaggtgcaaaggttgtaccttatataaaggctttcgaaaatactataaaa
gaatttggtaaaaatgaaactgagttagataaattgaaattagcaatagataatattaag
gaagaaaaggaaaagatagaaaagctatggatcatggcaaaggataataaggaaaataaa
cttcctcaatttattgtagaagaacaaaaggttaaagatgccattgaagaaaaaaagtta
atagatgagatacaaaataaaataaattctttagcagtacaaattaaagaattggatact
agaagtaaagagagccaagctgaacttcttaaaatagagacggaaataaaagataaaaat
aaatcaatcaaagaagatgaaaaaaattgtgatgatttaaaaactgatgaaaagcttaaa
gaaaaggttcaagaaggaataattatagaagaaaaagtgagtgatttaaaatctattgtt
actaaggaccaagaaaaaaaggtttctcttgaaaaagaaaatagtgaaactatattaaaa
ggaaaagccttaaaagacataattgaaaaagcaaagaaggacttggaagataatgaaaag
caatatgatcatttgcttaaaaattcacctggcgagcaaaaggatttggtgaatttaaat
caattgatagttgaaaatgatcaaaagtggaagatatatcataagtcaaatgatgatata
aaggtttcagaagctgaaataaaatctttgaatattgaaattgtaaatgcaaaagaagaa
gtaaaaaaacaagaagaagaattagaaaaaataaaaaataaacaaaatgaaattataaga
gaaaatttagcacataagctaagagaagaacttaatgatggagaaatatgcccagtatgt
ggctctacgcatcatctgaaagaaaatataaaaattgtagatacagtagatctaaaagat
atagaagatgaaataaaaagcaaagagaatttaataaaagttattaataataaggttgtt
caaaatgaaactaaagtgactaatttcaatgaaaagataaatgtaagcaaagaagaaata
aagaaattaggaactgaatttaaagaaaagccattagaaaaattaaaagatgaatttata
aatttgcaaaatgctttagaaaattatactaaagaaaaagaaagattagaaaaaagcatt
aataaattcaaaaatgaaataagtattaaaactggagaaataaatgaattaagagctgta
gtaagaactaaacaaacacaattagtagaattagaaaataatattaaactaaattcagaa
gaattaagtgttttgcagaataaggtgagtttattaaaatcagaaacatcagtagatgat
tttaataaaaagaatgaagaaattaaggcaattgaaaaagaaatagataaattagctaaa
gtagttaagaacaatagggaactagtggagaaatcagtaagaaaaagggaagaattaaat
agtgaattaacatctataaaagaaaaattagctaaagataatgcagatttagctggatat
gaaaaaaataaagaagaaaaacttcaagcaataaaaaataaagttgaggatgaaaatgat
ttagataccttacttaataaagttcaaaaaaatataaaaaatattaatgatgaatttcaa
gttgctgaaaataataaaaataaaatagaaaaagaatttactgataataatgaaaaatta
atagctacaattagtaaagataaagaattgagtaagagaaaaaaagagcaggaagcccaa
ttagaagtagctattgatagtgaaggatttaattctctggaggaagttaagaaaaatata
attggaaaagatgaaattaatgaatataaggaaaatgtagacaactataataacaatata
gcaagagtaagcggaacaattgaaagtttacttaagaaaaaaaatggtaaggaaataaca
aaagaaaattatgaacaattaaaatcattaaagaatgaaaaagaaaaagatgttaattat
gttaatgaaaataaaattaaaattgaggaagaattaaataatataagattaaagctcgca
gaacaaaaggatcttttagaaaaaaagaaaaaattagaacataaactagcgttacttagt
gatttggataaattatttaaggggaaaaaatttgttgaatttgtagcaacaaataagctg
aaatatgtatctattgaagcttctaaaagattgaaagaaataactcatggaaattatggc
ttagaagttgatgaaaatggtaaatttattattagagattataaaaatggtggggctaaa
agagatgcaacaactttatctggaggggagaccttcttagcgtcactcgcactagcttta
gcattatcagctcaaattcaattgaaaggaacggcaccacttgaattatttttccttgat
gaagggtttggaacattagatgatgaacttcttgaagttgttatgagttcattggaaaga
attcacaatgataaattaaaagtaggaattataagtcatgtagaggctataaaaaataga
gtgccggtaaaacttataattacaccagcagaatgcggcatgggaggaagtaaggttaaa
attgagagaagctag
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