Clostridium gelidum: psyc5s11_51860
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Entry
psyc5s11_51860 CDS
T08447
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cgel
Clostridium gelidum
Pathway
cgel03030
DNA replication
cgel03430
Mismatch repair
cgel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
psyc5s11_51860 (dnaE)
03430 Mismatch repair
psyc5s11_51860 (dnaE)
03440 Homologous recombination
psyc5s11_51860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgel03032
]
psyc5s11_51860 (dnaE)
03400 DNA repair and recombination proteins [BR:
cgel03400
]
psyc5s11_51860 (dnaE)
Enzymes [BR:
cgel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
psyc5s11_51860 (dnaE)
DNA replication proteins [BR:
cgel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
psyc5s11_51860 (dnaE)
DNA repair and recombination proteins [BR:
cgel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
psyc5s11_51860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
BCZ49119
LinkDB
All DBs
Position
complement(5642726..5646307)
Genome browser
AA seq
1193 aa
AA seq
DB search
MENEKEFVHLHLHTEYSLLDGSGKIKNLMKKAKELGMKSIAITDHGVMYGLVDFFKAAKE
NEIKPILGCEVYVVPKSMHIKQPDKENSTYHLVLLVKNQIGYENLMKIVSAASIEGFYYK
PRVDHDYLRKHSEGLIALSACLGGEVQSYHLKGNYEKAKEAALIYKDIFNGDFYLEVQNH
GMEEQKKVNEENIKLAKETGIPLVATNDVHYINKEDSKSHDVLMCIQTAKTIDDPNRRRY
PSDQFYFKSAEEMWDIFSYVPEALENTIKIAEQCNYEYKFHESKLPKFPLEEGQDPYEYL
RDTCYKGLIDRYDVFEGLVGKPLNYEQIDKIKDGSEKAKEYIDRLEYELDVIKQMGYIDY
FLIVWDFIRFSYESGIPTGPGRGSAAGSIVAFTLGITKIDPIKYNLIFERFLNPERVSMP
DIDSDFCYERRQEVIDYVVEKYGSSNVSQIITFGTMAPRVCIRDVGRAMNYSYSEVDRIA
KMIPTMLGITIEKSLEMNPELKLAYDNEERVKTLIDVAKDLEGLPRHSSTHAAGVVIASR
PLVEYVPLQKNDEMIVTQFGMGTLEELGLLKMDFLGLRTLTVMNDAINMVKQNRNIDIDL
DKIDFTDKEVYKMIGEGKTAGVFQLESAGMTSFMKELRPDNIEDIIAGISLYRPGPMAEI
PRYIDGKRNPEKVTYLTKELEPILKVTYGCLVYQEQVMQAVRDLAGYSMGRSDMVRRAMS
KKKHKVMEEERQNFIHGIVENDEVVVPGCIRNGITEDAANKIFDSMMDFASYAFNKSHAA
AYAVVGYQTAYIMKYYPVEMIAAMLNSIMGINEKVAYYIAIAEELGIQVLPPNINESFSR
FTVKGDKIIFGLAAIKNVGANVVDSIVKARKDKGEFESLVDFINKMEPSTINKRAVECLI
KAGALDEFKVFRSKMLAVHEKMIENISSDKKRNIDGQISLFATEELKNPEVKYPNIKEFN
KRNLLAMEKEMTGLYITGHPLDDYAQTLKMQTSNEISKIFLVQETLDETLENEMAEVAIF
AGADTLQDNDRVILGGILAVVNQKVTRNNTIMAFLKLEDLTGTIEVIVFPKTLDKVKELC
VTDSLVIIKGRLSLKEDEPPKLICETIEPLEKIDNSKVYLRVENSVEAKELSKKLKDLLI
KEYIGDTPIYIFASKEKQKFRVPRDRWISLDSDVINLLKENLGEENVKIQEGL
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaaaggaatttgtgcatctacatcttcatacggaatatagtttattagat
ggatcaggcaaaattaaaaatcttatgaaaaaagctaaagaattaggaatgaagagtata
gcaataacagatcatggtgttatgtatggacttgtagacttttttaaggctgcaaaagaa
aatgaaataaagccaatattaggttgtgaagtatatgtagtaccaaaatctatgcatatt
aaacagccagataaagaaaattcaacttatcatttggtattgttagttaaaaaccaaatt
ggatatgaaaatttgatgaagatagtatcagcagcatcaattgaaggattttattataag
ccaagagttgatcatgattatttaagaaagcatagtgaaggattaattgccttaagtgca
tgtttaggtggcgaagtacaatcttatcaccttaaaggaaattatgaaaaagctaaagaa
gcagctttaatatataaagatatatttaatggtgatttttatcttgaagtacaaaatcat
ggaatggaagaacaaaaaaaggtaaatgaagaaaatataaaattggctaaggaaacaggg
ataccattagttgctactaatgacgtccattatataaataaagaagattctaagtctcat
gatgtgctaatgtgtatacaaacagctaaaactatagatgatcctaatagaagaagatat
ccttcagatcaattttattttaaaagtgctgaagaaatgtgggatattttttcatatgta
ccagaagctttagaaaatacaattaaaattgcagaacaatgtaattatgagtataagttt
catgaatctaaattgcctaaatttccattagaagaagggcaagatccatatgaatatctt
agggatacttgctataaagggcttatagataggtatgatgtttttgaaggactagtcgga
aagcctttaaattatgaacaaatagataagataaaagatggtagcgagaaagcaaaagaa
tatatagatagattggaatatgagcttgacgttataaaacaaatgggttatattgattat
tttttaattgtttgggattttattagattttcttatgaaagtggaatcccaacaggacct
ggtagaggttcggcagcagggtcaatagtagcttttactttaggaattactaagatagat
cctataaagtataatttgatatttgagcgttttttaaatccagagagagtatctatgcct
gatattgatagcgacttctgttatgaaagaagacaagaagtaattgattatgttgtagag
aaatatggatcaagtaatgtttcacagataataacctttggtacaatggctcctagagta
tgcataagagatgtaggaagagctatgaactatagttattcagaagttgatagaattgct
aagatgataccgaccatgttaggcataactatagaaaagtcattagaaatgaatccagag
ctaaaattagcttatgacaatgaggaaagagtaaaaaccttaatagatgttgcaaaggac
ttagaaggactaccaaggcattcttcaacccatgcagcaggtgttgttattgcatcaaga
ccactagttgagtatgtaccactacaaaaaaatgatgaaatgatagtaactcaatttgga
atgggaactttagaagagcttgggctattaaagatggacttcttaggtcttagaacttta
actgttatgaatgatgctattaatatggttaaacaaaatagaaacattgatatagatctt
gataagatagattttactgataaagaagtttataaaatgattggtgaaggtaaaacagca
ggagtattccaattagaatcagctggtatgacatcttttatgaaggaattaagaccagat
aatatagaagacataattgcaggtatttcactatatagaccaggtcctatggctgaaata
ccaaggtacatagatggaaagagaaatccagaaaaagttacttatctaactaaagaatta
gaaccaatattaaaggtaacttatggatgtttggtgtatcaagaacaagtaatgcaagct
gttagagatttagcaggatattctatgggcagaagtgatatggttagaagagccatgtct
aagaaaaaacataaagtcatggaagaagaaagacaaaatttcattcatggtattgttgaa
aatgatgaagtagtagttccaggatgtataagaaatggaattacagaggatgcagcaaac
aagatttttgattctatgatggattttgcatcttatgcttttaataaatcacatgcagca
gcatatgcagttgtaggttatcaaacagcatacattatgaaatattatcctgtagaaatg
attgcagctatgcttaattcaattatgggaataaatgaaaaggtagcttattacattgca
atagcagaagaattaggtatacaagtattgccacctaacataaatgagagtttttcaaga
tttacagttaagggtgataaaattatatttggtttagcagctattaaaaatgtaggagct
aatgttgtagatagtattgtaaaggcaagaaaagacaaaggtgaatttgaatctttagta
gactttataaataagatggaaccatcaacaataaataaacgtgcagttgaatgtttaata
aaggctggcgctttagatgagtttaaagtttttagatcaaaaatgctagcagttcatgaa
aaaatgattgaaaatatatcaagtgataagaaaagaaatattgatggacaaataagttta
tttgcaactgaagaattaaaaaatccagaggttaagtatcctaatataaaagaatttaat
aaaagaaatttattagctatggaaaaagaaatgacgggactttatattacaggacatcct
ttagatgattatgctcaaactttaaaaatgcaaacttcaaatgaaatatctaagatattt
ttagttcaagaaacccttgatgaaacattagaaaatgagatggctgaagttgctatattt
gcaggggcagatactctgcaagacaatgatagagtaattcttgggggaatacttgcagta
gttaatcaaaaagtaactaggaataatacaataatggcatttttaaaacttgaagattta
acaggaacaattgaagtaatagtattccctaaaacattagataaagttaaagaattatgc
gtaacggatagtttagttataataaaggggagattaagtttaaaagaagatgaaccacct
aaacttatatgtgaaacgatagaacctttagaaaaaatagataattcaaaagtatattta
agagtagagaattcggtagaagcgaaagagcttagtaaaaagcttaaagatttattaata
aaagaatatattggagatacacctatttatatatttgcaagtaaagaaaaacaaaagttt
agggtaccacgagataggtggatttcactagatagtgatgtaataaatttgctaaaagaa
aatttaggcgaagaaaatgtaaaaatacaagaaggactttaa
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