Campylobacter geochelonis: CGEO_0450
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Entry
CGEO_0450 CDS
T06802
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgeo
Campylobacter geochelonis
Pathway
cgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGEO_0450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgeo03019
]
CGEO_0450
03009 Ribosome biogenesis [BR:
cgeo03009
]
CGEO_0450
Enzymes [BR:
cgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGEO_0450
Messenger RNA biogenesis [BR:
cgeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGEO_0450
Ribosome biogenesis [BR:
cgeo03009
]
Prokaryotic type
rRNA helicases
CGEO_0450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF6291
AAA_19
Flavi_DEAD
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QKF70779
LinkDB
All DBs
Position
466501..468054
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AA seq
517 aa
AA seq
DB search
MQINEFSIFGLDQNIEQALLEAGFKTPSPVQKEAIPLALEGFDMVVQAHTGTGKTAAFGL
PIMSKMVCDGSIETLVVTPTRELCIQVSDELYRLGKYKGVKTASIYGGQSYSRQISQVNG
EASIIVATPGRLLDLLKSGKIEINPKFIILDEADEMLDMGFLDDIKEILKFTPPSAQKLL
FSATMPEPIKKIAKEFLHDAKYVKIVSDTSTNVDIEQEYYVVEESERTDATIRLIDFYEP
QKAIIFCRMKKEADALAHTLLAKGHPSKALHGDMDQKDREATIRAFKKGDVEILVATDVA
ARGLDIDGVSHVFNYHIPFNPQSYVHRIGRTGRAGHKGLAITLVSPQEFRDLQRIKQSVG
GTISHKFIPSLDAMSEDLNNKLVEQIFNYEVDENAPKILTALEEVLTPSQIAYKMISILL
DANQLSGPQSIGLDAQNIERILEKYKKGANDKSRNSRQRRGSRDGRDSRGSRDSKRSGYK
KDGARDSRSEGRSEFKKDDRRKSESSFKQSDAKKRRL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgcaaataaacgaatttagcatttttggtttagaccaaaacatcgaacaggccctgctt
gaagcaggatttaaaactccaagtccagtgcaaaaagaggcgattccgctcgcacttgag
ggctttgatatggtggttcaagcccacactggcacaggaaaaacagcagcatttggactt
cctataatgagcaaaatggtatgcgatggcagtattgaaacgcttgtggttaccccaaca
agggaactttgtatacaagttagcgatgagctttacagacttggcaaatacaaaggcgta
aaaacagctagcatttatggcggacaaagttattcaagacaaatttcacaagtaaatggt
gaagcttctatcatcgtagcgactccaggaaggctacttgatcttttaaaatcaggcaaa
attgaaataaatcctaaatttatcatcttagatgaagctgatgaaatgcttgatatgggc
tttttagatgatattaaagaaattttaaaatttactccgccaagcgcgcaaaagctgctg
ttttctgcgactatgccagagccgattaaaaaaatcgcaaaagaatttctacacgacgca
aaatatgtaaaaatcgtctctgatacctctacaaatgtagatatcgagcaagagtattat
gtcgtagaagagagcgagagaacggacgccactataagattaatcgacttttatgagcca
caaaaagccattattttttgtcgtatgaaaaaagaagccgacgcacttgctcatacgctt
ttagcaaaaggtcatccatcaaaagctttgcatggcgatatggatcaaaaagatagagaa
gcgacaattagagcatttaaaaaaggcgatgttgagatacttgtagctactgatgtcgct
gctcgtgggcttgatattgacggtgttagtcatgtttttaactatcacatcccgtttaat
ccacaaagctatgttcacagaatcggaagaaccggtagagcagggcataaaggacttgct
ataactcttgttagcccacaagaatttcgtgatttgcaacgtataaaacaaagtgttggc
ggaacgatttcgcataaatttatcccatctttggatgctatgagcgaggatttaaacaac
aaattagttgagcaaatttttaactatgaagttgatgaaaacgcaccaaaaatcctaacc
gcgcttgaagaggtgctaactccatcgcagattgcttataagatgatttcgattttgctt
gatgcaaaccaactatctggtcctcaaagcataggacttgatgcgcaaaatatcgagaga
attttagaaaagtataaaaaaggcgctaacgacaaatcaagaaattctcgccaaagacga
ggttcaagagatggtcgcgatagtagaggaagcagagatagtaaacgctctggttataaa
aaagatggcgctagagatagtagaagcgaaggcagaagcgagtttaaaaaagacgataga
agaaaaagcgaaagtagttttaaacaaagcgatgctaaaaaaaggcgactctaa
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