Campylobacter geochelonis: CGEO_0502
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Entry
CGEO_0502 CDS
T06802
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgeo
Campylobacter geochelonis
Pathway
cgeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGEO_0502 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgeo03021
]
CGEO_0502 (rpoC)
03400 DNA repair and recombination proteins [BR:
cgeo03400
]
CGEO_0502 (rpoC)
Enzymes [BR:
cgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGEO_0502 (rpoC)
Transcription machinery [BR:
cgeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGEO_0502 (rpoC)
DNA repair and recombination proteins [BR:
cgeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGEO_0502 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QKF70826
LinkDB
All DBs
Position
514105..518616
Genome browser
AA seq
1503 aa
AA seq
DB search
MSEMNPIEIREDERPHDFDAVQVKLASPEEIRSWSRGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRFKGHKCEKCGVEITSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLDVKMKDLERVLYYEAYIVDNPGEAYYDNENSKKVQKYEVLNEEQYQMLYNR
YYDTGFNAKMGGEIIRDMLEELDLVAILEQLKSEMDSTNSEAKKKNIVKRLKVIESFVAS
GNRPEWMMITALPVLPADLRPLVSLDGGKFAVSDVNDLYRRVINRNTRLKRLMELDAPEI
IIRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLRMDQCGLPKTMALELFKPHLIARLQEKGYATTVKQSKKMIDDKVNEVWE
CLEEVVKDYPVMLNRAPTLHKMSIQAFHPTLVEGKAIRLHPLVCAAFNADFDGDQMAVHV
PLSQEAIAECKVLMLSSMNILLPASGKAVSVPSQDMVLGIYYLSLEKENARGTNKIFASV
EEVMMAVEARFLDVHAKIKTMVEGRTIFTTAGRLIIKSIIPDFIPDNVWNKIMKKKDIAN
LVDQVYKIGGFEITARFLDNLKNLGFESATKAGISISVADIIVPKSKHKYIAEAKKKVRE
IQNQYGIGLLTDSERYNKIVDIWTDTSAQVASEMMKLIKNDKDGFNSIYMMADSGARGSS
AQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTIHDCGTHEGIEISEITVNGDLVETLEDRITGRVLSDDVIDPITN
EILFTQGTLIDEIKAKEIVDAGIKSVSIRTPITCKAPKGVCSKCYGINLGEGKLVKPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTEQQDRQIVAKKEGFVRYYNLSTYENKGKRIV
SNRRNAAILIVEPKIKAPFTGTLSIEMAHEDIILVVKSKKEEARYTLRKHNLAKPNELAG
VSGKIEGKFYLPYANEQEVIENESIVEVIKEGWNVPGRIPYASEIKIADGEPVSQIIKSG
AKGILKFFILKGDYLERLKGIKKGHIVDEKGLFVVIADDIGREAIRYYIPRKSVIQFNDN
DKVDTNSVIAKPVNDEKEVIAEWDPYSTPIISEGAGIVSFEDIEPGYSATEQYDEATGQS
RLVINEYLSQGIKPTISIATDDGKLIKYQIDPKTAIFVADGQRVELADTLAKTPKAVAKS
KDITGGLPRVSELFEARRPKNIAVIAEIDGIVRFDKPLRSKERIIIESANGTTAEYLIDK
TRQIQVRDGEFIHAGEKLTDGLISSHDVLRILGEKALHYYLISEIQQVYRSQGVAISDKH
IEIIVSQMLRQVKILDSGNTNFITGDLVSRRKFREENERIMRIGGEPAIAEPVLLGVTRA
AIGSDSVISAASFQETTKVLTEASISGKFDYLEDLKENVILGRMIPVGTGLYKNQKIKIK
AQE
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatgaatccaattgaaataagagaagatgaaagaccacatgattttgatgct
gttcaggtaaaattagctagccctgaagagataagatcatggagtcgtggtgaagtaaaa
aaaccagaaactatcaactatagaactttaaagcctgaaagagatgggcttttctgcgct
aaaatttttggaccaattcgagattatgagtgcctttgtggaaagtataaaaaaatgcgt
tttaaaggccataaatgcgaaaaatgtggcgttgagataactagctcaaaagttcgccgt
tctcgcatgggtcacatcgaacttgtaacgccagtagcgcacatttggtatgtaaattcg
cttccatcaagaatcggcactcttttagatgttaagatgaaagatttagagcgcgtactt
tactatgaagcatatatcgttgataatccaggcgaagcatattatgataatgaaaactca
aaaaaagttcaaaagtatgaagtgttaaacgaagagcagtatcaaatgctttataaccgc
tactatgacactggctttaatgcaaaaatgggtggcgagattataagagatatgcttgaa
gagcttgatttagtagctattttagagcaactaaaatcagaaatggatagcacaaattca
gaagctaagaagaaaaatatcgtaaaaagactaaaagtaatcgaaagttttgtcgcttca
ggaaacagaccagagtggatgatgataacagcacttcctgttttaccggctgatttacgt
ccgcttgttagcctagatggtggtaaatttgcggtttctgatgtaaatgatttatataga
agagtgataaacagaaacacaagactaaaacgccttatggagcttgatgcgcctgaaatt
atcataagaaatgaaaaaagaatgcttcaagaatcagttgatgctctttttgacaatggc
cgtagagcaaacgctgtaaaaggcgctaacaaacgtccacttaaatctttaagcgagatt
ataaaaggtaaacaaggtcgttttagacaaaatttacttggtaaaagggttgacttttct
ggtcgttctgttatcgttgttggtccaaatttaagaatggatcaatgtggtcttccaaaa
acaatggcattagagctatttaagccacatttgattgctcgtttacaagaaaagggctac
gcaactacagtaaaacagtctaagaagatgatagatgataaagtaaacgaagtttgggaa
tgcttagaagaggttgttaaagactaccctgttatgctaaaccgtgcaccaacacttcac
aaaatgtcgattcaagctttccacccaactttggttgaaggtaaggctatcaggcttcat
ccactagtttgtgctgcatttaatgccgactttgacggcgatcaaatggcggtgcatgtg
ccactttctcaagaggcgattgcagagtgcaaagtgcttatgctaagctcgatgaatatc
ttgcttccagcaagcggtaaggcagtttctgttccttctcaagatatggttttaggaatt
tactacctatctttggaaaaagaaaacgctagaggaacaaataaaatttttgctagcgtt
gaagaggttatgatggcggttgaggctagatttttagatgttcacgctaaaataaaaact
atggtagagggaagaacgatatttacaaccgctggaagattgataataaaatcaattatc
ccagattttattccagataatgtttggaataaaataatgaagaaaaaggatatagcgaat
ttggtagatcaagtctataaaatcggtggttttgaaataactgctagatttcttgataac
cttaaaaatttaggttttgaatcagcgactaaggctggaatttctatatctgttgctgat
ataatcgttccaaaatcaaaacataaatatatagccgaagcaaagaaaaaagttagagag
attcaaaaccagtatggtatcggacttttaactgattctgaaagatataataaaatcgtt
gatatctggacagatacaagcgctcaagttgcatcagagatgatgaagcttattaaaaat
gataaagatggatttaactcgatttatatgatggcagactctggagctagaggtagttca
gcacaaattcgtcagcttgctggtatgcgtggacttatggcaaaacctgatggaagtatt
atcgagactcctattacatcaaatttccgcgagggactaaatgttttagagtactttatc
tcaactcacggcgctagaaaaggtcttgcagatacagcgttaaaaacagcaaatgctgga
tatctaacaagaaagcttatagatgttgctcaaaatgttaaagttacaattcatgattgt
ggaacacatgagggtattgaaatttctgaaattactgtaaatggcgatttggttgaaacg
ctagaagatagaattacaggaagagttttaagtgatgatgtgattgatcctattacaaat
gagattttatttactcaagggactttgatagatgaaataaaagcaaaagagattgtagat
gctggtataaaatcagtaagcatacgaactccaatcacttgtaaagcgccaaaaggcgta
tgttctaaatgttatggtatcaacctaggtgaaggtaaacttgtaaaaccgggcgaggct
gttggaattatctcagctcaatcaatcggcgagccaggaactcagctaacgctaagaaca
ttccacatcggtggaaccgcttctaccgagcaacaagatagacaaattgtcgctaaaaaa
gagggttttgtaagatactacaacttaagcacttatgaaaataaaggcaaaagaatagtg
tcaaatagaagaaatgctgctattttgatagttgaaccaaagattaaagcgccatttact
ggaactttaagcatcgagatggctcacgaagatataatcttagtagtaaaatctaaaaaa
gaagaggctagatatactcttagaaaacacaaccttgccaaaccaaacgagctggctgga
gttagtggtaaaatagagggtaaattctacttgccatatgcaaatgagcaagaagttatc
gaaaatgagagcatagttgaagttataaaagagggctggaatgttccaggacgaattcct
tatgctagcgagataaagattgcagatggagagccagtaagtcagattataaaatcaggc
gctaaaggtatacttaaattctttattttaaaaggcgattatttagagagattaaaaggt
atcaaaaaaggtcatatagtcgatgaaaaaggactttttgttgttatagctgatgatata
ggaagagaagcgattcgttattatataccaagaaaatcagttattcagtttaacgataac
gataaggttgatacaaactcagtcatcgcaaaaccggtaaatgatgaaaaagaggttatc
gcagagtgggatccttactcaactccgattatatctgaaggcgctggaattgtatctttt
gaagatatcgagccaggatacagtgcgactgaacaatacgatgaagcgactggacagagc
cgtttggttataaacgagtatctatctcaaggtataaaaccaactattagcatagctact
gatgatggaaagttgataaaataccaaatcgatccaaaaactgcgattttcgtagccgat
ggacaaagagtagagctagcagatactttggctaagactccaaaagcggttgctaagtca
aaagatatcaccggtggtcttccaagagttagtgagctttttgaagcgcgtcgtccaaaa
aatatagctgttatcgctgaaatcgatggcatagttagattcgataaaccacttcgctca
aaagagagaattatcatcgaatcagcaaatggcacaacagcagagtatctaatagacaaa
actcgccaaattcaagtaagagatggagagtttattcacgcaggcgaaaagctaaccgat
ggacttataagcagccatgatgttttaagaattcttggagaaaaagcgcttcactactat
ttgataagtgagattcaacaagtttaccgctcacaaggcgttgccattagcgataagcat
attgaaattatcgtttctcagatgcttaggcaggttaaaattttagatagcggaaataca
aatttcataactggagatcttgtaagtagacgtaaatttagagaagaaaacgagcgaatt
atgcgaatcggcggtgagccagctatcgcagaaccagttcttcttggtgttacaagagca
gccattggaagtgatagtgtgatttcagcagcatctttccaagagactacaaaggttcta
accgaagctagtatctctggtaaatttgactatcttgaagatcttaaagaaaacgtaatt
cttggtagaatgatacctgttggaacaggtctttataaaaaccaaaaaatcaaaatcaaa
gctcaagaataa
DBGET
integrated database retrieval system
