Campylobacter geochelonis: CGEO_0694
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Entry
CGEO_0694 CDS
T06802
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cgeo
Campylobacter geochelonis
Pathway
cgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGEO_0694 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgeo03019
]
CGEO_0694 (rnr)
03016 Transfer RNA biogenesis [BR:
cgeo03016
]
CGEO_0694 (rnr)
Enzymes [BR:
cgeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CGEO_0694 (rnr)
Messenger RNA biogenesis [BR:
cgeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CGEO_0694 (rnr)
Transfer RNA biogenesis [BR:
cgeo03016
]
Prokaryotic type
tRNA degradation factors
CGEO_0694 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKF71015
LinkDB
All DBs
Position
752126..754054
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AA seq
642 aa
AA seq
DB search
MKTFLENLLIGVDESSITQQEKEILRNMQMLNAVSKKKKLSFLNDGFVCGRLDISVNGTG
YINAYDKRYKDDIIVENRDINSSKVGDIVLAKLTKGKKGRNKGKILLTLKPAFLTSVVYT
KKFGKEILGVNVKSGLAYALKATQKSLKQMPLGTLLKINNQKDEIVEVLGNLDDVWVDEK
ISLAIYNKNSEFSDVCEKEAKSFGDSVDRSLYPNRIDLRELEFCTIDPVDAKDFDDAIYY
DAKKCELYVAIADVSEYVNAYTAIDKEAKFRGFSIYFPHKAIPMLPRALSENICSLKPDV
DRLAFVFKITIDKDFNATKEELFEAIIRSKKRFNYDEVDEILRTKSYADKKLLDMLLAVE
ELTLNLRKIRLKTGFDFRTKELRMSLDESGNLKSTRFEVSTPSHDLIEDCMLMANKAAAK
RISKGIFRNHDAIDLKKVDFLLQDLLALGIDAKFDPDIAKMVEGIQKIADDMGMREEIDK
LIIKAQKKAEYATLPKGHFGLGFGEYSHFTSPIRRYSDLILHRLLKANLADDKRLFNYLL
LNIEETCVSLNELEREADKVAYDFMDRKFARWASERIGQKVQCYIDENSNITTAKLDDKI
KGARIYIINYTADVLTRVLVEILEADIVSGKIIGRVVKKLNV
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttttagaaaacctccttatcggggttgatgaaagctctataactcagcaa
gaaaaagagattttaagaaatatgcagatgttaaatgctgtgtctaagaaaaaaaaacta
tcttttttaaatgatggatttgtctgtggacggcttgatattagcgtaaatggcacgggc
tacataaacgcatacgataaaagatataaagatgacattatcgtagaaaacagagatata
aacagctcaaaagttggcgatatagtcttagcaaagctaactaagggcaaaaaaggcaga
aacaaaggtaaaattttgctaaccttaaaaccagcttttctaacaagcgttgtttatact
aaaaaatttggtaaagaaattttaggcgtaaatgtcaaaagtggcttagcgtatgcttta
aaagcaacgcaaaaatcgcttaaacagatgcctcttggcactcttttaaagataaataac
caaaaagatgagatagttgaagttttaggaaatttagatgatgtttgggtagatgagaaa
atttctcttgcgatttataacaaaaatagcgaatttagcgatgtttgcgaaaaagaagca
aaaagctttggagatagcgttgatagatctttatatccaaatcgcattgatttaagggag
cttgagttttgcactattgatccagttgatgcaaaagactttgatgatgcgatttattat
gacgcaaaaaaatgtgagctatatgtagcaatcgccgatgttagcgagtatgtaaacgcc
tacacagctatagataaagaggctaaattcagaggattttcgatatattttccacacaag
gcgattcctatgcttccacgagccttgagtgaaaatatctgctctcttaaaccagatgtt
gatagacttgcatttgtttttaaaatcaccatagataaggactttaacgctacaaaagaa
gagctttttgaagcgattataagatctaaaaaacgctttaactacgatgaagtagatgaa
attttacgtacaaaaagttacgctgataaaaagcttttagatatgcttttagcggttgaa
gagctaactttaaatttacgaaaaatcaggttaaaaacaggctttgactttagaacaaaa
gagcttagaatgagtcttgatgagagtggaaatttaaaaagcacgagatttgaagtctca
actccatcgcatgatttaatcgaagattgcatgcttatggcaaacaaagcagcagcaaaa
cgtataagtaaggggatatttagaaatcacgatgcgattgatttaaaaaaggttgatttc
ttgcttcaagatctgcttgcacttggaatagatgctaaatttgacccagatatcgcaaaa
atggttgaaggaattcaaaaaatcgccgatgatatgggtatgcgcgaagagatagataaa
cttatcatcaaagcgcaaaaaaaagccgagtatgcaacgctaccaaaggggcattttggg
cttggatttggtgagtattcacactttacaagtccgattagaaggtattcggacttgatt
ttgcatcgtcttttaaaagcaaatttagcagatgataaaaggctttttaactatctgctt
ttaaacatagaagagacttgtgttagcttaaatgaacttgaaagagaagctgataaagtc
gcatatgactttatggataggaaatttgcgcgttgggcgagcgagcgaatagggcaaaaa
gttcagtgctatatagatgaaaactcaaacatcacaaccgcaaagcttgatgataagata
aaaggggctagaatttatatcataaactacacagcagatgtgctaacaagggtgcttgtt
gaaattttagaagctgatatagtaagtggaaaaatcataggaagagtggtgaaaaaacta
aatgtataa
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