Capnocytophaga gingivalis: CGC50_02015
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Entry
CGC50_02015 CDS
T05260
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC50_02015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgh03019
]
CGC50_02015
03400 DNA repair and recombination proteins [BR:
cgh03400
]
CGC50_02015
Enzymes [BR:
cgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC50_02015
Messenger RNA biogenesis [BR:
cgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC50_02015
DNA repair and recombination proteins [BR:
cgh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGC50_02015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DnaD_N
wHTH-PRTase_assc
HTH_Crp_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ATA86033
UniProt:
A0A250FLQ3
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All DBs
Position
418256..420157
Genome browser
AA seq
633 aa
AA seq
DB search
MHPLALEILKKHWGYEQFRPAQEPIVTSILEGKDTLAMLPTGGGKSICFQVPAMVKKGVC
LVISPLISLMEDQVKNLSEHGIPALALTGSIPYYEIERLMHNVQHEAYKFLYLSPERLAN
EEVIFYLKSTPLNYIVIDEAHCISHWGKDFRPAYLACKNLREWFPTLPIIALTATATERV
QKDIIEHLQIPQAQIIKGSLIRSNLAYMTYCIDDKWERLTRILLKNKESSIVYVRNRRLS
EELAQHLTDEGFTATSFHGGLPVEEKSKRLGMWKLGDVQVMVATNAFGMGIDKADVRTVI
HWDLPSSLEDYFQEAGRAGRDGHKAFAIVLYNDNDVKKLLVDTQRSQVSPEFLKELYPKL
CSHFIIATGEGEGTSHLFNLADFASKTQMDALKIYQGLEVLDRNGVLSLSQAFFRKANVQ
ILLSSREVIDYLDNNTELKELLFFLMRKYSGIHEQVISFRIEKIAANLHLTSPEIQQKLE
KLQQDGIISYRSENTDAEITFLMPRDDERTINYISPQVRWYNENKVNQCNEVLAYIEQEE
KCNQRFLLEYFSEETKEDCGICSYCIARKQKNLSKTSIESISEEILRLVSTHPMSSQELC
RKSSYHEWEILHVLTLLLDKEKIRLLPTNQWSA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcacccacttgccttagaaatacttaagaaacattggggatatgagcagttccgtcca
gcacaagagcccatagtgacttcaatccttgagggaaaagacaccttagccatgctacct
acaggcgggggaaagtctatttgttttcaagtccctgccatggtcaaaaagggcgtttgt
ctggtaatctctcccttgatttcgctcatggaagaccaagtcaagaacctctcagagcat
ggtattcctgccttagccctcacaggaagtattccctactatgaaatagagcgactaatg
cacaatgtgcaacatgaagcctacaaattcttatacctttcccctgaacgacttgcaaat
gaggaagtaatcttctatctaaaaagtaccccactgaactatatagttatcgatgaggcg
cactgtatttcccactggggaaaggacttccgtcctgcttatttagcctgcaaaaacctc
agagaatggttccctaccctccctatcatagcccttacagccactgctactgaaagagtc
caaaaggacatcatagaacacctacagattccacaagctcagatcatcaaggggagtctt
atccgctccaatttagcctatatgacctactgtatagatgataagtgggaacgcctcact
cgtattcttctcaaaaacaaagaaagtagcattgtgtatgtacgcaaccgccgacttagt
gaagaactggcacagcatctgactgacgaaggcttcaccgctacaagcttccatggagga
ttgcctgtggaggaaaagagcaaacgcttaggcatgtggaaattaggcgatgtgcaagtg
atggtcgccactaatgccttcggaatggggattgataaggccgatgtacgcaccgttatc
cattgggatttgcccagttccttggaagactatttccaagaagcaggtagggcaggtagg
gatggacacaaggcttttgctattgtgttatataacgataatgatgtaaaaaaactctta
gtggatacccagaggagccaagtgtcccctgagtttctcaaagaactctaccccaagcta
tgtagccactttatcatcgctactggagaaggcgaaggaacaagccatttgttcaacttg
gctgattttgcctccaaaacacagatggatgctctaaagatctatcaaggattggaggta
ttagaccgcaatggggtactctccctaagccaagccttcttccgaaaagccaatgtacag
attctcctctcaagtcgtgaggtaattgactatttggacaacaacaccgagctaaaagaa
ctgcttttttttctcatgcgcaaatactcagggatacacgaacaagttatttccttcaga
atagaaaaaatagctgccaacctacacctgacctctccagagattcagcaaaaattagaa
aaactacaacaagatggtattatcagctaccgtagtgaaaacactgatgctgaaatcacc
tttctcatgcctcgtgatgacgagagaacaatcaactacatctccccacaggtgaggtgg
tacaatgagaacaaagtaaatcaatgtaatgaagtcctcgcctatatagagcaagaagaa
aagtgcaaccaacgatttcttttggaatacttttcagaagagacaaaggaagattgtgga
atctgttcctattgtatcgctcgcaaacagaaaaatctctcaaagacctctattgaatcc
atatccgaagaaatactacgccttgtaagcacccatcccatgtcctctcaggaactctgt
cgcaagagctcttatcacgaatgggagatactacatgtactcacccttctgttggacaag
gagaaaatccgactactccctaccaatcagtggagtgcctga
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