Capnocytophaga gingivalis: CGC50_02225
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Entry
CGC50_02225 CDS
T05260
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC50_02225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgh03019
]
CGC50_02225
03009 Ribosome biogenesis [BR:
cgh03009
]
CGC50_02225
Enzymes [BR:
cgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGC50_02225
Messenger RNA biogenesis [BR:
cgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC50_02225
Ribosome biogenesis [BR:
cgh03009
]
Prokaryotic type
rRNA helicases
CGC50_02225
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
AAA_22
HTH_Card1
Peptidase_S78_2
Motif
Other DBs
NCBI-ProteinID:
ATA86072
UniProt:
A0A250FLP1
LinkDB
All DBs
Position
complement(461947..463692)
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AA seq
581 aa
AA seq
DB search
MNLFKTLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLEAPTDMVALAQTGTGKTAAFGFP
LLQLIDPTQRMTQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEEQARSLK
KGAHIIVATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDDKNT
WLFSATMPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQRYEALKRLADAN
PSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKTIEKI
IQKTFEYKSIPSGMEICEIQLYHLANTIKDTQVNPAVNEYLPAIYDVLSNLNREELIQRM
VAVEFNRFYNYYSKSKDLNAEPSEGKSFSSEGETRYFINIGERDGYNWQLLKDFLRENIG
LGKNDIFKVDVKDTFSFFNTEAEMTQLVLDTFADFKMDNRAIHIEISQQRSSEGKGRKDR
RDRKEKKESKDKKFSHKEDKKKGGKRKEASNTFSSKRKRRK
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttaaaacattggggctaagcgcacccctactcgaagctattgatgacttg
ggcttcgagcgtccgtctgaggtacaacaagccgctatacctgtattgcttgaagcgcct
accgatatggtggcactggcacaaacaggaacaggaaaaactgctgcttttggttttcca
cttcttcaactcatagatcctacccagcgtatgactcaggggctcatcttagctcctact
cgtgaattgtgtttgcagatcgcctccgaactcaagcagtatgctaagtatatgccacag
gtgcatattgtggctatctatggaggagcaagtatagaggaacaggctcgtagccttaag
aaaggggctcatattatcgtggcgacccctggccgtatgcaggatatgatgcgccgtgag
tttacctctattgcgcagatcagctattgtgtgctcgatgaggctgatgaaatgctcaat
atgggcttctatgaggatatccgctctatattatccgaaacacctgatgataagaatact
tggctcttctcagctacgatgcctgccgaggtggccaaaattgccaaagagttcatgcac
catcctaaggagattactataggacataagaatcaggcttccaacaatgtacttcacgaa
tgttatattgttaatgggcgtcagcgctatgaggcacttaagcgcttggctgatgccaat
ccatctatattttcggtggtgttctgccgtaccaagcgtgatacccaagcagtagccgaa
aaacttatagaggacggttacaatgcggctgctctacatggtgatctaagccagaaccag
cgtgatttggtaatgaagggttttcgtgccaagcaaattcagatgctcgtggcaaccgat
gtggcagctcgcggaatagatgtagatgatattacccatgtgattcattatcaacttcct
gacgagatagagacctacactcaccgcagtggtcgtacagggcgtgcaggcaagtcgggg
gtatccatggtcatactaaccaagagtgaggctaagcgtatcaagaccattgagaagatc
atccagaagacttttgagtataagtctatccccagtggaatggaaatctgtgagatacag
ctctaccatttggccaatacgattaaggatacacaggtgaatccagcggtcaatgagtat
ctgccagccatttacgatgtactgagcaatctaaaccgtgaggaactgatccagcgtatg
gtagcggtagagttcaatcgtttttacaactattatagcaagtccaaagatctcaatgcg
gaaccctccgaaggcaagtccttctcctctgaaggcgaaacacgctactttatcaatata
ggggaacgtgatggttataattggcaactacttaaggatttccttagagaaaatattggt
ttgggtaaaaatgatattttcaaggtagatgtaaaagatactttttctttcttcaatacc
gaagcggagatgacccagctggtattggatacctttgccgatttcaagatggataatcgt
gctattcatatagaaatctctcaacaacgttcctcagagggtaaaggaagaaaagacaga
cgggatagaaaggaaaaaaaagagagcaaggataaaaaattctctcacaaagaggataag
aagaaaggtggcaaacgtaaagaagcttctaatactttctcttctaaaagaaaaagaaga
aagtaa
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