Capnocytophaga gingivalis: CGC50_04375
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Entry
CGC50_04375 CDS
T05260
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC50_04375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgh03021
]
CGC50_04375 (rpoC)
03400 DNA repair and recombination proteins [BR:
cgh03400
]
CGC50_04375 (rpoC)
Enzymes [BR:
cgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC50_04375 (rpoC)
Transcription machinery [BR:
cgh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC50_04375 (rpoC)
DNA repair and recombination proteins [BR:
cgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC50_04375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ATA88139
UniProt:
A0A250FSK2
LinkDB
All DBs
Position
complement(959922..964205)
Genome browser
AA seq
1427 aa
AA seq
DB search
MARVKEKNATLRFDKISIGLASPESILAVSRGEVAKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYIVIQPGIAKTIDGDPIEKMDFLTEEEYLDIMESLPIENQY
LEDTDPNKFIAKMGAEALFDLLHDLDLDALSYDLRHKANTETSKQRKTEALKRLQVVEAF
RDSQKNRENKPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLI
EIKAPDVILRNEKRMLQESVDSLFDNTRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKRIIDK
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQMLMLASNNILNPANGAPITVPSQDMVLGLYYITKMRKSTPEE
PIAGEGSVFYSPEEVNIAYNERKVHLNASIKVRTKDLDENGNIVTKLIETTVGRVLFNEV
VPIEAGYINTVLTKKSLRDIIGHVLKKTSIPRTAEFLDDIKSMGYKFAFQGGLSFSLGDI
IIPQEKQAMIADANEQVQGIIGNYNMGLITNNERYNQVIDVWTSTNARLTDLAMKRISED
RQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTDDCGTLRGIEVHALKKNE
EVIETLGERVLGRVALNDIVNPLNEEIIVLAGEEIREDAVDKINQAPIESIEVRSALTCE
AKHGICAKCYGRNLSTGKMVQIGEAVGVVAAQSIGEPGTQLTLRTFHMGGTAGNISEENK
IIAHFDGILEIDDLKTVKGEDYDGNPVEVVISRTSEVKILEPHTRMVLSTSNIPYGSFIF
KKNGDTIQKGEVINQWDPYNAVIISEFSGQIVYENIEQGVTFQVEIDEQTGFQEKVISES
RNKRLIPTLHIQDKSGNILRSYTLPLGAHIMVDDKEKIKEGKILVKIPRKSAKSGDITGG
LPRVTELFEARNPSNPAIVAEIDGVVSFGKVKRGNREIFIESKTGEKRTYLVKLSSQVLV
QENDYVRAGMPLSDGSVTPEDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVEIQDPGDTLFLEEQMVHKDDFIEENDKLFGKKVVIDAGDSENLKAGQIVTMRQL
RDENSLLKRQDKNLVAARDVIPATAIPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
QGKVDTLDGLKENVIVGHRIPAGTGMKRYENIIVGARKDLAKQNINL
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagtaaaagagaaaaatgcaactttgagatttgacaaaatctctatcggattg
gcttcacctgagagtatcttggccgtttctcgtggagaggtggctaagcctgaaaccatc
aactaccgcacccacaagcctgagcgagatggtctcttctgtgagcgcatcttcggccca
gtgaaggactatgagtgtgcttgtggtaagtataagcgtatccgctataaaggcatcgtg
tgtgatcgttgtggagtggaagtaactgagaaaaaagtacgtagagagcgtgtggggcat
atcaatctggtagtgcctatagcgcatatttggtatttccgttcacttcctaataaaatt
ggttatctccttgggctgccttccaagaagttggatatgattatctattacgaacgctat
atcgtaatccagccagggatagctaaaacgattgatggagatcctattgagaagatggat
ttccttaccgaggaagaatatttggatatcatggagtctcttccaatagaaaaccaatat
ttggaagatacagatcctaataagttcatagcaaagatgggggctgaagctctcttcgat
ttgcttcatgacttagatctcgatgcactctcttatgaccttcgtcacaaggccaataca
gagacttctaaacagcgcaagactgaggcgctcaagagattgcaagtggtagaggccttc
cgtgattctcagaaaaatcgtgagaataagcctgaatggatgattatgaaggttatccct
gtgattcctcctgaattgcgcccattggtgcctttggatgggggacgctttgcaacctct
gacctcaatgacctataccgacgcgtgattatacgtaacaatcgtcttaagcgattgatc
gaaattaaagcaccagatgtgatcttgcgcaacgaaaagcgtatgttgcaggaatctgta
gattcacttttcgataatactcgtaagtcttctgctgtaaagaccgatgccaatcgtccg
ctgaaatctctttcagactctctcaaagggaaacaaggacgcttccgtcagaacttgcta
ggtaagcgtgtggactattctgcgcgttcggtaattgttgtagggcctgaaatgaaactt
tacgaatgtggtttgcctaagaatatggctgccgagctctacaagccttttgtgatacgt
aagctcatagagcgtggtatcgtaaagactgtgaaatcagctaagcgtattattgataaa
aaagagcctgtagtatgggatatcttggagaatgtaatcaagggacaccctgtactactg
aaccgtgctcctactttgcaccgcttggggattcaagctttccagccaaagcttattgaa
ggaaaagcaattcgtcttcacccattggtatgtaccgctttcaacgcggacttcgatggt
gaccagatggctgtacacttgccactggggcctgaggctattctcgaagctcaaatgctg
atgttggcttccaacaatatattgaatcctgccaatggggcacctattactgtaccttct
caggacatggtcttgggtctgtactatattactaagatgcgcaagagtaccccagaagaa
cctatcgctggtgaaggctctgtgttctactctcctgaggaggtgaatatcgcttataac
gagcgtaaggtacatctgaatgcctctatcaaggtgcgtactaaggacttagatgaaaat
ggaaatattgtaactaagcttatagaaaccactgtagggcgtgtcctcttcaatgaggtt
gttcctatagaggctggatatattaatacggtattgaccaaaaaatctctccgagatatt
atcggtcacgtacttaagaaaacaagtattcctcgcactgcagaattcttggatgatatc
aagtctatggggtataagtttgctttccaaggaggactttctttctccttaggtgatatc
attatccctcaggaaaaacaagcgatgattgccgatgccaatgaacaagtacagggaatc
attggtaactataacatgggacttatcaccaataacgaacgttataaccaggtgatcgat
gtatggacttctaccaatgcccgccttactgacttagcgatgaagcgtatcagtgaggac
agacaagggttcaactctgtatatatgatgcttgactctggggcgcgtggttccaaggaa
cagattcgccagcttaccggtatgcgtggtctgatggctaagccaaagaaatctaccgct
ggtgggggcgagatcattgagaacccgatcctttcgaacttcaaggaaggtctttctatc
ttagagtactttatctctacccacggagcgcgtaagggacttgccgatacagcgcttaaa
acagccgatgcgggttatcttactcgtaggttggtggatgtatctcaggatgtgattatc
aatactgatgactgtggaaccctccgtggtattgaggtacatgccctcaagaaaaatgaa
gaggttattgagactttgggtgaacgtgtattaggccgtgtagctctcaatgatattgtc
aatccacttaatgaagaaattattgtccttgcaggagaagaaattcgcgaagatgccgtg
gataagatcaatcaggctcctatcgaatctatagaagtgcgttcagcacttacctgtgaa
gctaagcatggtatttgtgctaaatgttatggacgaaacctctccaccggtaagatggta
cagataggagaggccgtaggagtagtagctgctcagtctatcggggagccaggtactcag
cttaccttgcgtactttccacatggggggaactgcaggtaatatctccgaggaaaacaaa
attattgcgcacttcgatggtatcctcgaaatagatgaccttaagacagttaagggagaa
gattatgacggaaatccagtagaggtggtgatctctcgtacttccgaggtgaagatctta
gaacctcatacccgtatggtactaagtacctccaacattccttatggttcctttatcttt
aagaaaaatggagatactatacaaaaaggagaggtgatcaaccaatgggatccttataat
gcggtgattatctccgagttctccggacagattgtctacgaaaatatagaacaaggggtt
accttccaggttgagatagacgaacaaacaggattccaagagaaagtgatctctgaatct
cgtaacaaacgactcattcctaccctacatattcaggataagagcggaaatatcttacgt
tcgtacaccttaccgttaggagctcacatcatggtggatgacaaggaaaagattaaagaa
ggtaagatcttagtaaaaatccctcgtaagtccgccaagtctggggatatcacagggggt
cttccacgtgtaacagagctcttcgaagcacgtaatccttccaatccagctattgtagcc
gagatcgatggggttgtttcctttggtaaagtaaagcgtggtaaccgtgagatcttcata
gaatccaaaacaggagaaaagcgtacttacttggtaaaactctcttctcaggtattggta
caggagaatgactatgtacgtgcagggatgcctctttccgatggttcggtaactccagag
gatatcctacgtatcaaaggaccttcagcagtacagcagtatttggttaatgaggtgcaa
gaggtataccgactccaaggggtgaagatcaatgacaaacactttgaagtggtagtacgc
cagatgatgcgtaaggtagaaatacaagatccaggggatacactcttcctcgaagaacaa
atggttcacaaggatgacttcatcgaagaaaatgataagctcttcggtaagaaggttgtc
atagatgctggagattctgaaaatctcaaagcaggacagattgtgaccatgcgtcagctt
cgtgatgagaactctctccttaagcgtcaggataagaaccttgttgccgctcgcgatgtc
atccctgctactgcaattcctgtattgcaagggattacacgagcctccctacagactaag
tcctttatctcggccgcttccttccaggaaacgactaaagtactcaatgaggctgccgta
caaggtaaggtagataccctcgacggacttaaggaaaatgttattgtaggtcaccgtatc
cctgctggtactggtatgaaacgttatgagaatatcatagtaggcgctcgcaaggattta
gctaagcaaaatatcaacctataa
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integrated database retrieval system
