Capnocytophaga gingivalis: CGC50_05480
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Entry
CGC50_05480 CDS
T05260
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGC50_05480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgh03021
]
CGC50_05480 (rpoB)
03400 DNA repair and recombination proteins [BR:
cgh03400
]
CGC50_05480 (rpoB)
Enzymes [BR:
cgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGC50_05480 (rpoB)
Transcription machinery [BR:
cgh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGC50_05480 (rpoB)
DNA repair and recombination proteins [BR:
cgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGC50_05480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
efThoc1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ATA86665
UniProt:
A0A250FQK1
LinkDB
All DBs
Position
complement(1190850..1194659)
Genome browser
AA seq
1269 aa
AA seq
DB search
MLTNQSSRINFASTKHVPDYPDFLDIQVKSFQDFFQMETKSDARSGEGLYSTFKENFPIT
DTRNQFVLEFLDYFIDPPRYSVEECIERGLTYSVPLKARLKLFCTDPEHEDFETIVQDVY
LGTIPYMTGSGTFIINGAERVVVSQLHRSPGVFFGQSYHANGTKLYSARIIPFKGSWIEF
TTDINNVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYLGRRL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILEKEHIDQIVESNAKTILLHKEDER
SVDYNIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARDIIDKLFFSDQRYNLGDV
GRYRMNKKLGLDIPMEKQVLTKEDIITIVKYLIELINSKAEVDDIDHLSNRRVRTVGEQL
AAQFGVGLARMARTIRERMNVRDNEVFTPLDLINAKTLSSVINSFFGTSQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAK
VNNMGFIETPYRKVENGKIKLDELVYMSAEEEEGLKIPQANIQVDDQGNILDERLVVKED
GDYPVVSREEVDYIDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPI
VGTGLEKRVVTDSRVLINAEREGTVTYVDADKIVIEYDRTEDEILVSFDSRLTTYNLIKF
RRTNQGTCINLKPIVRKGDRVHKGQVLCQGYATEQGELALGRNMKVAFMPWKGYNFEDAI
VISERVIREDIFTSIHIDEYTLDVRDTKLGVEELTNDIPNVSEDATKDLDENGIVRIGAN
IKPGDILIGKVTPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLEGVVIGKKLFSR
AVKTKQKRAKEKDEMAALDAAFNAKAEALKDVLLEKLFSLVNGKTSQGVFNDLGEEMIPK
GRKHTQRGLKEIEDYTHLLSGGWTTDEHTNELINDLIHNYKIKLNDLQGMLRRDKFTLTV
GDELPAGIMKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGQKLGKKFATPIFDGASLEQITEYTNEAGVPAFGHTYL
YDGGTGERFDQKATVGVIYMIKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASSTLREILTVKSDDVIGRARTYEAIVHGDTMPEPGLPESFNVLMHELKG
LGLDIRLED
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgcttacgaaccaatcttccagaattaattttgcttcaaccaagcatgtgcctgactat
ccggattttttggatattcaggtgaaatcattccaagatttcttccagatggagaccaag
tcggatgccagaagtggcgaggggctatatagcaccttcaaggagaattttcctatcacc
gacacccgcaaccagtttgtactggagttcttggactatttcatagaccctcctcgctac
tctgtggaggagtgtatagagcgtggacttacttatagtgttcccctcaaggctcgtctt
aagctcttttgtactgacccagaacatgaggatttcgagaccattgtacaggatgtatat
ttgggtaccatcccatatatgactggtagtggtacctttatcatcaatggggctgagcgt
gtggttgtctctcagctacaccgttcgccaggggtgttcttcggacagtcttaccatgcc
aatggtaccaagctctattcggctcgtatcattcctttcaaaggatcttggatagaattt
actacagatatcaacaatgtcatgtatgcctacatcgaccgtaagaaaaagttgcctgta
acgactctcttccgtgccataggcttcgagcgtgacaaggatatcctcgagatattcgac
ctggcagaagaggtgaaagtctctaagacaggtcttaagaaatacctcggtcgtcgcctt
gctgcccgtgtgctcaacacttggcatgaggacttcgtggacgaagatacaggcgaagtg
gtatctatcgagcgtaatgagatcatccttgaccgtgataccatcctcgaaaaagaacat
atcgaccagattgtagaatccaatgccaagaccatcctccttcataaggaagatgagcgc
agtgtggactacaacatcattcataacaccctccagaaagaccctaccaactccgaaaag
gaggccgtagagcacatctaccgtcagttgcgcaacgcagaaccacccgatgaggaaacc
gctcgcgacatcatcgataagctcttcttctctgaccaacgctacaacttgggcgatgta
gggcgctatcgtatgaataaaaaattagggctcgatatccctatggaaaaacaggtactt
accaaggaagatatcatcaccattgtgaagtatctcatcgagcttatcaactccaaagcc
gaggttgatgatatcgaccacctttccaaccgtcgtgtgcgcaccgtaggcgaacagctc
gccgctcagttcggcgtgggattggctcgtatggcacgtaccattcgtgagcgtatgaat
gtacgtgacaatgaggtctttacaccactggacttgatcaacgccaagaccctttcttcg
gtgatcaactctttcttcggtaccagccagctctcccagttcatggatcagaccaacccg
ctggccgaaatcacccacaagcgccgtctctctgccctcggtcctggaggtctctcccgc
gaacgtgcaggctttgaggtacgtgacgtacactatactcactacggacgcctttgtcct
atcgaaacccctgaaggtcctaacatcggtcttatctcctctttggctgtatatgccaag
gtgaacaacatgggattcatagagactccttaccgcaaggtagaaaatggaaaaataaaa
ctcgacgaactcgtatacatgagtgccgaagaggaagaaggtcttaagattcctcaagcc
aatattcaggtggacgaccaaggaaatatcctcgacgaacgcttggtagtgaaagaagat
ggggactaccctgtcgtctctcgcgaagaagtggattacatagacgtggcgcctaaccag
atcgcctccatctctgcttcccttattcctttcttggagcacgacgacgccaaccgtgcg
cttatgggatccaacatgatgcgccaggcggtaccgctcttgcgccctgaagcccctatc
gtgggtacaggcctcgaaaaacgtgtagttaccgactcccgcgtacttatcaatgccgaa
agagaaggtaccgtaacctatgtggatgccgacaaaattgtcatcgagtacgaccgcacc
gaagacgaaatccttgtttccttcgatagtagactgactacctataaccttattaagttc
cgccgtaccaaccaaggtacttgtatcaacctaaaacctatcgtgcgcaagggtgaccgt
gtgcataagggacaagtactctgccaaggatatgctaccgaacaaggtgaactcgcctta
ggtcgcaatatgaaggtagccttcatgccttggaaagggtacaacttcgaggatgcgatt
gtgatctccgaacgtgtaatccgtgaggatatcttcacctccatccatatcgacgagtat
accctcgatgtacgtgatactaagctcggggtagaggaactcaccaacgatatccctaac
gtatccgaggatgctaccaaagacctcgatgaaaacggtatcgtacgtatcggagccaat
atcaaacctggggatatccttatcggtaaggtgactcctaagggagaaagcgatcctact
cctgaggaaaaactccttagagcgatcttcggtgacaaagccggcgacgtgaaggatgct
tctctgaaggcttctccatccctcgaaggagtggttatcggtaaaaaactcttctcccgt
gcggtgaagaccaaacaaaaacgtgccaaagaaaaagacgaaatggcagccctcgatgca
gcgttcaacgctaaagcagaggcgcttaaggatgtcctcctcgaaaaactcttctctttg
gtcaatggaaaaacctctcaaggggtattcaatgatttaggggaagaaatgattcctaag
ggtagaaaacatacccaaagaggtctcaaagaaatagaagactatacacacttgctctct
ggtggttggactaccgatgagcataccaatgagctaatcaacgacttgattcacaattac
aaaatcaagcttaacgaccttcagggtatgctccgccgcgacaagttcaccctcactgta
ggggatgagctacctgcgggtatcatgaagctcgccaagatatacatcgctaagaagcgt
aaacttaaagtaggggacaagatggccggtcgccacggtaacaaaggtatcgtagcccgt
atcgtacgtgatgaggatatgcctttccttgaggacggaactcctgtggatatcgtactc
aacccacttggggtaccttctcgtatgaatatcggtcagatatacgaaaccgtactcgga
tgggcaggtcagaaactcggcaagaagtttgctacccctatcttcgacggagcttccctc
gagcagattaccgaatataccaatgaggcaggtgtacctgctttcggacatacttacctc
tatgacggaggtaccggagagcgcttcgaccagaaggctaccgtaggggtgatctacatg
atcaagctcggtcacatgatcgacgataagatgcacgcccgttctatcggtccttactct
cttatcacccagcaaccactcggtggtaaagcacagttcggaggtcagcgtttcggggaa
atggaggtatgggctctcgaagcctatggagcttccagcacccttcgcgagatccttact
gttaagtccgacgatgtcatcggtcgtgcccgtacctacgaggctatcgtacacggcgat
accatgcctgaaccaggcttgcctgagtccttcaacgtactcatgcacgaactcaaggga
ttgggcttggatatccgcttagaagactaa
DBGET
integrated database retrieval system
