Capnocytophaga gingivalis: CGC50_07255
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Entry
CGC50_07255 CDS
T05260
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC50_07255 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgh03019
]
CGC50_07255 (rnr)
03016 Transfer RNA biogenesis [BR:
cgh03016
]
CGC50_07255 (rnr)
Enzymes [BR:
cgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CGC50_07255 (rnr)
Messenger RNA biogenesis [BR:
cgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CGC50_07255 (rnr)
Transfer RNA biogenesis [BR:
cgh03016
]
Prokaryotic type
tRNA degradation factors
CGC50_07255 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
SPOC_AIPP2
GldM_1st
WHD_MCM4
RNase_Zc3h12a
RNase_II_C_S1
Myb_DNA-binding_7
Motif
Other DBs
NCBI-ProteinID:
ATA86966
UniProt:
A0A250FSK3
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All DBs
Position
1513213..1515408
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AA seq
731 aa
AA seq
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MSRKKIKQKKKKNKDFSRDILVILQKNSNKSFTWKQIAEKLKATSTEMRNDIIASLTKLV
KQSHIQETTQGNYQAQESTYYHKGVVDMASNGNAYVVCEDLEQDVFVPNNLLNKALHGDV
VEVYVFPRRREKLEGEITQIIERKRTTFVGVVQMQKNFAFVVPTDRRMYTDIFVPKTDCN
GAEDGDKVLVRITQWTSRANSPYGVIEKILGKPGEHDTEIHAILAEYGLPHEFPKEVEEY
AQGLDTSIKEEEIAKRRDMREVLTFTIDPRDAKDFDDALSFQVLENGNFEIGVHIADVSH
YVQPNTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPEEEKYTFSAIFELSPKAE
IRNTWLGRTVIRSDARFAYEEAQAVIEALGTPHTEPTDFVMPQEISIRPEGSYTVSKEIV
EAILSLNALAEILREKRMRAGAISFDKVEVKFLLDENNNPLGVYTKESKEANKLIEEFML
LANRKVAEYASKLQKTFVYRIHDVPDEEKLLQMQGIISRFGYRLNLKDKKNISHSINHLL
EEVHGKKEQNLVDTLAIRSMSKAAYSTHNIGHYGLAFDDYTHFTSPIRRYPDVMVHRLLQ
RYLDKEASANEAEYEEKCKHSSQMENLATSAERDSIKYMQIKYMEDHKDQEFLGVISGVT
EFGIYVEIIENKCEGMIRARDIKDDYYVFDEKAYALIGEVSKKRYTLGDEVWIRVKNTDL
IKRHLDFELVK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgagtaggaaaaaaattaagcaaaaaaagaaaaagaacaaggattttagcagagatatt
ctggtgatccttcagaaaaatagcaataagagttttacttggaaacagatcgctgagaag
ctcaaggcgacctctaccgagatgcgtaatgatatcattgcttccttgacaaagcttgta
aaacagtctcatattcaggaaactacacaaggaaactaccaagcacaggaatctacttat
taccacaaaggggtggtcgatatggcttctaatggcaatgcttatgtggtttgtgaggat
ttggaacaagatgtatttgttcctaacaacttgcttaacaaggctctacatggtgatgta
gtggaagtatacgtattcccacggcgtcgagagaaactcgaaggggaaatcacccagatc
atagagcgtaagcgtactacctttgtaggggtggtacagatgcagaagaattttgctttt
gtagtgcctaccgataggagaatgtatacagatatttttgtacctaagactgattgtaat
ggagctgaagatggggataaggtcttggtacgtattactcagtggacatcgcgtgccaat
tctccctatggggtgatagagaagattcttggcaagcctggggaacatgatacggagata
catgctatcttggccgaatatggacttcctcatgagtttcctaaggaagtagaagaatat
gcacaaggcttggatacttctatcaaggaggaagagattgccaagcgtagagatatgcgc
gaagtgcttacttttaccattgacccacgtgatgctaaggattttgacgatgcactttcc
ttccaagtacttgagaatggaaactttgagataggggtacacatagccgatgtctctcac
tatgtacagcccaatacgattttggacgacgaggcttaccagcgtgccacttcggtatat
ttagtggatagggtagtgcctatgcttcctgaggtgctatctaactttgcttgctcactg
cgccctgaagaagagaaatacaccttctcggcaatcttcgaactctctccgaaggcagaa
attcgcaatacttggctgggtcgtacagtgattcgctccgatgcacgctttgcctatgag
gaggcacaggcggtgattgaggctttgggtacccctcatacagaaccgacggattttgtg
atgcctcaggagatttccattcgtcctgaagggagctatactgtttctaaagagatagta
gaggctattctttcgctgaatgccttggctgaaattctccgtgagaagcgcatgagagca
ggagctatttcgtttgataaggtggaggtgaaattccttttagatgaaaataataatcct
ttgggagtatatactaaggagagtaaggaagctaataagcttatagaggagtttatgcta
ttggccaatcgcaaggtagccgagtatgcctctaagctccaaaaaacattcgtataccgt
attcacgatgtccccgatgaggaaaaactcctacagatgcaggggatcatctctcgcttt
ggttaccgcctgaacctcaaggataagaagaatatttcccactctatcaatcacttgtta
gaagaagtacacggcaagaaggaacagaatttggtagatactttggcgatccgctctatg
agtaaggcagcgtattctactcataatattgggcattatggtttggcttttgacgattat
actcactttacttctcctattcgccgctatccggatgtgatggtacatcgcttgctgcag
cgatatttagataaagaagcctcggcaaatgaggctgagtacgaagagaaatgtaaacat
tcgtctcagatggagaacttggctacttctgccgagagggattctatcaaatatatgcag
atcaagtatatggaggatcacaaggatcaggagttcttaggagtgatttcaggagtgacc
gagtttggtatctatgtggaaattatagaaaataagtgtgaggggatgatacgtgctcgt
gatatcaaagacgattactatgtattcgacgagaaagcctatgcactgataggggaggtg
agtaagaagcgctataccttgggcgatgaggtatggatacgtgtaaagaatacagacctt
atcaagcggcacttggattttgagttagtaaaataa
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