Capnocytophaga gingivalis: CGC50_08795
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Entry
CGC50_08795 CDS
T05260
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgh
Capnocytophaga gingivalis
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgh03016
]
CGC50_08795
Enzymes [BR:
cgh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CGC50_08795
Transfer RNA biogenesis [BR:
cgh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CGC50_08795
Prokaryotic type
tRNA splicing ligases
CGC50_08795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATA87251
UniProt:
A0A250FQI2
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All DBs
Position
1855412..1856803
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AA seq
463 aa
AA seq
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MANLKLKGKDLLKLGFPNNQSINVALEVMKRNYATKNTAYVKSVLEDILKNPSQYEGHLT
FGQIAEALLSSTKTEKRQLNATRAPYHIFGDDITEEAKTQLYTALKLPISVGGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGLDIGCRMCLSILDIPVSYLSGARDKYEKALVEHTKFG
MYEIHKSHVDHEIFERDTFSLIPILKRLKDKAIKQMGTSGSGNHFVEFGEVELLADDPQI
GLPKGKYLGILSHSGSRGFGAEIAQYYVRVAAEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHEDIHRRLIRAVGGRLRARIENHHNFAWKEIHDGKEVIVHRKGATPAGE
GVLGIIPASMTDAGYIVRGKGNAESFDSASHGAGRAFSRNESKNRFTNSDIKKALKAKDI
TLIGGNAEEAPMAYKNIETVMASQTDLVDIIGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttaaaactcaaagggaaagatctactgaagttaggcttcccgaataatcaa
tctatcaatgtagcgttggaagtgatgaagcgcaattacgctactaagaataccgcttat
gtaaagtcggtactcgaagatattttaaaaaatccttcgcagtacgaagggcaccttact
tttggtcagatagccgaagcgctgctttcatctactaaaaccgaaaaacgacagctcaac
gctacacgtgccccttatcatatctttggcgatgacatcaccgaagaggctaaaacgcaa
ctctacaccgcgctaaaactccctatttcggtaggtggcgccctaatgccggatgcccat
agcggctatggattacccataggtggcgtactggcggtggagaatgcggtcattccttat
ggcgtaggcttggacatcggttgccgtatgtgcctcagtatcttggatatccctgtatct
tacctctcgggggcacgtgataagtacgagaaagcccttgtggaacatacgaagttcggt
atgtacgaaatccacaaatcacacgtagaccacgagattttcgagcgtgatactttttcg
ctgattcctatcctcaagcgattgaaagataaagcaatcaagcagatgggtacttcgggc
agtggcaatcactttgtggaatttggcgaggtagaactcttggcagacgacccacaaata
ggcttacccaaaggaaaatatctcggtatactttctcacagtgggtcgcgtggttttggt
gctgaaattgctcagtattatgtgcgtgtagcagccgaacagtgtccgctcccgaaggaa
gcccaacagtttgcgtggcttgacctctcgacccacttagggttagagtattggacggct
atgaacctcgcaggtgattacgcatctgcctgtcatgaggatattcaccgccgacttatt
cgcgccgtgggcggccgcctgagagcacgcatagagaaccaccacaattttgcgtggaaa
gaaattcacgatggcaaggaggtgatcgtacaccgcaaaggagcgactccagcaggggag
ggggtactgggtattatccctgcctcaatgaccgatgcgggctacatagtgcggggcaaa
ggcaatgccgagagtttcgattcagcttcacatggggcaggacgcgctttctcgcgcaat
gaaagcaagaatcgctttaccaattccgatatcaaaaaagccctcaaagccaaagatatt
accctcattggaggcaatgccgaagaagctcctatggcgtataaaaacatagaaaccgta
atggcttcccaaactgatttggtagatatcattggtactttccagccacgtatcgtgcga
atggacaagtaa
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