Capnocytophaga gingivalis: CGC50_09940
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Entry
CGC50_09940 CDS
T05260
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgh
Capnocytophaga gingivalis
Pathway
cgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGC50_09940 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgh03019
]
CGC50_09940 (recQ)
03400 DNA repair and recombination proteins [BR:
cgh03400
]
CGC50_09940 (recQ)
Enzymes [BR:
cgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC50_09940 (recQ)
Messenger RNA biogenesis [BR:
cgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGC50_09940 (recQ)
DNA repair and recombination proteins [BR:
cgh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGC50_09940 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
ATA87446
UniProt:
A0A250FTX4
LinkDB
All DBs
Position
complement(2086654..2088843)
Genome browser
AA seq
729 aa
AA seq
DB search
MSTTNVELQKALKSIFGFSAFKGKQEEIIRSIMDNHHTFVLMPTGGGKSLCYQLPALLKE
GTAIVISPLIALMKNQVDVIRGISGTDKIAHVLNSSLTKGEIRNVMEDIRNGDTKLLYVA
PESLTKDEYADFLKTINISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIPIIALT
ATATTKVQEDILKNLGVPEANVFKSSFNRPNLYYEVRPKTKNINSDIIRFVKQRPGQSGI
IYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFGMGI
DKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVGKPIAEQ
EVGQALLQDMVAYAETSSSRRKFILHYFGEEFDEINGEGANMDDNMRYPKTKKEAKEQVT
MLLDVIDKTRQRLKAKDLVNVLTGKYSAIIKSNRFDEQDFFGCGSDLDGHFWMSLIRQVM
VNDYIRKDIETYGVMFLTDKGRAFLKEPHSFMMTEDHNFDEDPDEPAKNTVSALDDTLLK
YLKDLRKKVAKEFGVPPFVVFQDTSLEDMCMKYPINITELTNVFGVGEGKAKKYGKEFVS
LIAKYVEENDIIRPEDLIVKTTGANSALKLFIIQNVDKKLPLPDIAKAKGLSMDEFLKEM
EQIVYSGTKLNINYWIDEILDEEQQEELHDYFLDAETDKISVASKEFGGDYEDDELRLYR
IKFISEVGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaacaaatgttgaattacaaaaagcgttaaaaagcatttttggcttcagtgcc
ttcaaaggaaagcaagaggagattattcgcagtatcatggacaatcatcacaccttcgtt
ttgatgcccaccggtggcggaaaatccctttgttaccagctccctgccttgctcaaggaa
ggaactgctattgtgatttctccacttattgccctgatgaagaaccaagtagatgtcata
agaggcatctctggcactgataaaatagcccacgtattgaactcctccctcaccaaagga
gagatccgtaatgtaatggaggatattcgtaatggagacaccaagttgctatatgtggct
ccagaatcactcaccaaggatgaatatgcggacttcttaaaaactatcaatatctccttt
gtcgcggtagatgaagcgcactgtatttctgaatggggacatgattttcgccctgaatat
cgaaatataaaaactatcatagaacgcttaggagaaggaattcctatcatcgctctaacg
gcaacggcgactaccaaggtacaagaagacattctcaagaacttaggagtgcccgaggcc
aatgtattcaaatcctccttcaatcgccctaacctatactatgaggtacgccccaagacg
aaaaacatcaatagtgatatcattcgctttgtcaaacaacgtcctggacaatcgggaatt
atctactgtctgagccgcaagagtgtagaggaacttgcccaaaccctacaggtgaatggg
atcactgctattccctaccatgcaggcttggatgccaagacacgtgccaagcaccaagat
atgttcctgatggaagaagtagacgtagtggtagctaccatcgcttttggaatgggaatt
gataagcccgatgttcgctttgtcatccactacgacattcctaagagtatcgaaagctac
taccaagaaactgggcgtgctgggcgtgatggtggagaagggtattgccttgctttctac
tgctataaggatatagagaaattggagaaattcatggtaggtaagcctattgctgagcaa
gaggtaggacaagccctcttgcaggacatggtagcctatgcagagacctccagctctcgt
aggaagttcatcctacactatttcggagaagagttcgacgagatcaatggggaaggtgcc
aatatggatgacaatatgcgctatcctaagaccaagaaagaggctaaagaacaagttact
atgcttttggacgttattgacaaaacccgccaaagactcaaagccaaagacttggtcaat
gtacttaccggcaaatattcagctattatcaagtccaaccgttttgacgaacaggatttc
ttcggctgtggtagtgacttagatggacatttctggatgtcactcattcgccaagtaatg
gtcaatgattacatacgcaaggatatagagacctatggggtgatgttccttaccgacaag
gggcgcgccttcctcaaggaacctcattcgttcatgatgacggaggatcacaacttcgac
gaagatcctgacgaaccagctaagaataccgtttcagccttggatgatacactactgaag
tacctgaaggacttgcgcaaaaaggtagctaaggaatttggtgtacctccttttgtagtg
ttccaagacacctctctggaggatatgtgtatgaaatatcctatcaatatcacagaactc
accaatgtatttggtgtaggagaagggaaggctaaaaaatacggaaaagagtttgtctct
ctcatagccaaatatgtagaagagaatgatatcatccgcccagaagatctaattgtaaaa
accacaggagctaattctgcactaaaactctttatcatccaaaatgtagacaagaagctc
cctcttcctgatattgctaaagcaaagggactgtccatggatgagttcctcaaggaaatg
gaacaaatcgtatacagtggtaccaagctgaatatcaactactggatagatgaaattctt
gatgaagagcaacaagaagagctccatgattacttcttggatgccgagacagataaaata
tctgtagcttccaaagaatttggtggggattacgaagatgacgagctacgtctgtatcgt
attaagtttatcagtgaagtaggaaactaa
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