Cryptococcus gattii: CGB_A6680C
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Entry
CGB_A6680C CDS
T02232
Name
(RefSeq) pol II protein elongation factor
KO
K15172
transcription elongation factor SPT5
Organism
cgi
Cryptococcus gattii
Pathway
cgi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CGB_A6680C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_A6680C
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_A6680C
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CGB_A6680C
RNA polymerase I system
CGB_A6680C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CGB_A6680C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW2_Spt5
KOW4_SPT5
Spt5_N
KOW1_SPT5
KOWx_SPT5
KOW5_SPT5
KOW
CTD
Ribosomal_uL24m-like
Motif
Other DBs
NCBI-GeneID:
10188509
NCBI-ProteinID:
XP_003191826
UniProt:
E6QY94
LinkDB
All DBs
Position
A:complement(join(1383264..1383658,1383716..1384271,1384327..1384401,1384452..1384587,1384644..1385026,1385079..1386356,1386410..1386645,1386696..1386806,1386855..1387026,1387081..1387091,1387156..1387177,1387229..1387312))
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AA seq
1152 aa
AA seq
DB search
MSDIEVKTSPPESPVEEQEETRLAGRKRARVVDPDEEDDDTQIVNNQDEEKDTKEEDDEE
EDNGQVERTGEGEDDEDEDEDDDDDDEDEDDEDDDGERRAKRRRKQKRFRFLDVEAEVDD
EDEEEDEDNDYGDVAEFIDEAPEDAGTRDDHQHRRLNRVFGRNEEEDVHDIVQRLKERHA
GAARYNGDSDAVPQRLLMPGVNDPSLWKVVVKSGREHAICASIFRKVFAQQYSANPIDVI
SVFCRDSIPGMIFIEARQSASVSAAVNGIVGIFMSKGVNLVPIEEMAPLLKMKKKDVNLT
PGMWVRMKRGKHAGDLAQVVDVDQITSGVVGIKFIPRIDLTPREKRKERIAIGKPGGVRP
PARLFAYDDVRKIYGRQSVRQGAQGSYLFDNDEYVDGFCIKDVKIPAVATEDVNPTLEEI
SRFTGDDDSTAKFDLSAIADANKNLSTSLLFPGDKIEVYEGEQTGLCGIVETVSSDVIAI
KAEGGEVHGQTVEVPARSVRKRFDVGEHVKVLGGKHTDASGMVVEVKGDIVTLMSDLGEQ
EIKVFSKDLRKAADTTNLTATKGLYDVHDMVMLDSTTAGVVTKVEGGLLRILDQNGAAKG
VSPEQVSLRRDNKRFAVATDSQGNDMKVGDSMKEIDGEMRQGEVINIFRSIFVFLYNREY
TDNFGVFVARANSLVSVTPKSAVNDLTKINPALNQQLPYGGASLIPAPTANLNRNRLINT
LVVVTKGTSKGLIGVIKDVQGENARVELKHNNKTLSVNLSSLKRKDQKTGATFPLEMAGV
GSAAGGYGARPNAGQYDINPYGGATAMHPSMGGQTPALMGGRTPAVRFGQTPNPYSAGVQ
NGKTPNPYATGVGGKTPSAAYASGGKTPAWGASGGKTPAYGMASGGKTPAYGMQGGKTPN
PYAMGPPGPSGGRTPAYGAYGRPESSGSRPSAMPPPPAPYSVPYSAPTPAGNGAPTPAVP
GNPYTAPTPYGAPTPYAAPTPGMPALSAPTPGPGTGIAPTPFGAPTPYGAQSYGASAQQQ
RGLPWDWALDFRNVIVEIGPSYRPGSRNPLHFKRGFFDGKRFGYNDIIGESVRAILLDDP
SVVEEIPAEYLRPAKADSQGQVVVVIGGGPEQKGQQRTTQYENGGSWMMELEGGDMAPLV
VDGADLCRIWKV
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacatcgaagtaaaaacttcgccgcccgagtcacctgtagaagagcaggaggaa
acaagattagccgggagaaagagagcaagagtagtggatcctgacgaggaggatgatgat
acccaaattgtgaataatcaggatgaggagaaggatacgaaagaagaggatgacgaagag
gaagataacggacaagtagaaaggactggcgaaggtgaagatgacgaggatgaagatgag
gacgatgatgatgacgacgaggacgaagatgacgaagacgatgatggagagcgacgtgca
aagcgacgcagaaagcaaaagaggttcaggttcttggatgtcgaagctgaggttgacgac
gaggatgaagaagaggatgaagacaacgattatggagacgtcgctgagttcattgatgag
gcgcctgaggacgctggaactcgggatgatcatcaacatcgccgacttaatcgcgtcttt
ggacgtaacgaagaggaggatgtgcatgatattgtgcagagattgaaggagagacatgcc
ggtgcagcgaggtataacggcgacagtgatgcagtcccgcaaagactgcttatgcctggt
gtcaacgatccaagcttgtggaaggtggttgtcaaatccggccgagaacacgctatctgt
gcctcaatcttccgaaaggtttttgcacaacaatattctgcgaacccgatcgatgtcatc
tccgtcttctgccgtgattccattccagggatgatcttcattgaagcccgccaatccgcc
tccgtgagcgccgctgtcaatggcattgtcggcatattcatgtctaagggcgtcaacctc
gttcccattgaggagatggcgcccttgctcaagatgaagaagaaagacgtcaatctcacg
ccagggatgtgggtgagaatgaagagaggcaagcacgcgggtgacttggcgcaggtggtg
gatgtcgaccagatcacgagcggtgttgtcggtataaagtttattcctcgcatcgatctc
acacctcgagaaaagaggaaggagcgcattgccattggaaagccgggtggtgttcgccca
ccagctcgtcttttcgcgtatgacgacgtacgaaagatctatggacgacaaagcgtgcgt
caaggcgcgcaaggcagttatctgtttgataatgacgagtatgtcgacgggttttgcatc
aaggatgtcaagatccccgcagttgcgacggaggacgtcaatcctaccctcgaagagatc
tcacgtttcaccggagacgatgactccaccgccaaattcgatctttctgctattgcagac
gcaaacaagaacctttccacatctctccttttccctggtgacaagattgaagtttatgaa
ggagaacagacagggctgtgtggtattgtagaaaccgtgtcttccgacgtcattgctatt
aaagctgagggtggagaggtccatggccagactgttgaggtgcctgcgagaagtgttcgg
aaacgcttcgatgttggtgaacatgtcaaggtgctgggaggaaagcatacagatgcgtcg
ggtatggtggtggaggttaaaggagacattgtgactttgatgtctgatctgggcgagcaa
gaaatcaaagttttttctaaggatcttcgaaaagccgctgataccaccaatctcaccgct
acgaaaggtttatatgacgttcacgacatggtgatgttggattcaacgacggcgggggta
gtgaccaaggtggaaggagggttgctgagaatcttggatcaaaacggtgccgccaagggt
gtttcccctgagcaggtctcattaagaagggacaacaaacgctttgctgtcgccacagac
tcacaagggaacgacatgaaagttggtgacagcatgaaggaaattgacggagagatgcga
caaggagaagtcatcaacatcttccgctccatctttgtgtttctctataaccgcgaatac
accgacaatttcggtgtcttcgttgctcgtgccaactctcttgtgtctgttactcccaaa
tcagctgttaatgacctcaccaagataaacccagcacttaatcagcaacttccttatggc
ggtgcaagtcttataccagctcccacggcgaatctcaacagaaacagactcattaacaca
cttgtggttgtgacaaaagggacgagtaaggggttgattggtgtcatcaaagacgtacaa
ggtgaaaacgcaagagtcgagctgaaacacaacaataagaccctctcagtgaacctctct
tcgcttaagagaaaagaccaaaaaactggtgcgacattccctttggaaatggctggcgta
ggttctgcggctggtggttatggcgctcgtccaaatgccgggcaatacgatatcaacccg
tacggcggcgcaacagctatgcacccctcgatgggcgggcagactccggccttgatgggt
ggaaggacaccagctgttcggtttggacagactcctaacccatattcggctggcgtacaa
aatggcaaaacgcccaacccgtatgcgacaggcgtcgggggcaagacaccgtcagcggcc
tacgcctccggcggtaagactccggcatggggcgcttctggaggcaagacaccagcatat
ggtatggcatccggaggcaaaaccccagcatacggcatgcaagggggcaagacccccaat
ccctacgccatgggtcctcccggtccttctggtggtcgaacaccggcatatggagcttac
ggtcgacctgaatcaagtggttccaggcccagcgctatgcctcctcctcccgcgccttac
agcgtcccatacagtgcaccaacgccagctggtaatggagcaccgacacctgctgtccca
ggcaacccttatacagctccaacgccttatggtgcacccactccctatgctgcaccgact
cccggtatgcctgctctttcagcccctacacctggaccaggcactggcattgcgcctaca
ccatttggggctccgacaccctatggggcgcaaagctacggtgcttccgcacagcagcag
cgaggtctgccttgggattgggccctggacttcagaaacgttattgtggaaatcggccct
tcctatcgtcccggctctcgtaaccctctacatttcaagcgaggattctttgatggtaaa
cgatttggctacaacgacatcattggcgagagtgtacgggcaatactcttggatgaccct
tcagtcgtagaagagatacctgcggaatatctccgtccagctaaggcggatagtcaagga
caagttgtggttgtcattggtggcgggccagaacaaaagggtcaacaacggacaacccaa
tatgagaatggagggtcttggatgatggagctggaaggaggcgatatggcgcctttggtc
gttgatggtgctgatttgtgtaggatttggaaagtgtag
DBGET
integrated database retrieval system
