Cryptococcus gattii: CGB_A8290W
Help
Entry
CGB_A8290W CDS
T02232
Name
(RefSeq) ATP dependent RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03013
Nucleocytoplasmic transport
cgi03015
mRNA surveillance pathway
cgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CGB_A8290W
09122 Translation
03013 Nucleocytoplasmic transport
CGB_A8290W
03015 mRNA surveillance pathway
CGB_A8290W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_A8290W
03041 Spliceosome [BR:
cgi03041
]
CGB_A8290W
Enzymes [BR:
cgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGB_A8290W
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CGB_A8290W
Spliceosome [BR:
cgi03041
]
Complex C
Other components
EJC/TREX
CGB_A8290W
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CGB_A8290W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Ned1_M
CMS1
Motif
Other DBs
NCBI-GeneID:
10188394
NCBI-ProteinID:
XP_003191688
UniProt:
E6QYJ4
LinkDB
All DBs
Position
A:join(1668379..1668563,1668620..1668687,1668738..1668846,1668893..1669194,1669648..1669766,1669818..1670059,1670113..1670221,1670271..1670465)
Genome browser
AA seq
442 aa
AA seq
DB search
MTNSTNLNLITKMSRPDEEELVDYDEAAEEILPPAPAAETNGDKADGDKKGSYVGIHSTG
FRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQ
IEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEK
CPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQV
MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLDN
LEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVAT
DIFGRGIDVERVNVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSNDADQEVLQKIQ
ERFTVAIPTLPETVDPATYMTS
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacagcaccaatctcaacttgatcaccaaaatgtcccgacctgacgaagaagaa
ctcgttgactacgatgaggccgccgaggagatcctgccccccgcccccgccgccgaaacc
aatggcgacaaggcggatggtgacaagaaaggttcttatgtcggtatccattccaccggt
ttcagggatttccttttgaagcccgagctcctccgagccatctctgatctcggttttgaa
cacccctctgaggttcaacaggaatgtattccccaggccatcctcggtacagatgttctg
tgtcaagccaagtctggtatgggtaagacggctgtgtttgtgcttgctgcgttgcaacag
attgagcctgttgatggcgaggtttccatcattattctctgtcacactcgagagcttgcc
tatcagatcaagaatgagtttactcgtttctccaagttcatgaccaatgtccgaactggt
gtcttttacggtggtactcccatttcggccgaccaggagatccttgccaacaaggaaaag
tgccctcacattgttgttggtacccctggccgaactatggccctcgtccgtgacaagaag
ctcaacgccagtaaggtcaagcactttgttcttgacgagtgcgacaagatgctcgaacaa
cttgatatgcgacgagacgttcaggaaatcttccgagccacccctcaccacaagcaggtt
atgatgttctctgccaccctttccaaggacatccgagctacttgcaaaaagtttatgcaa
agtcctcttgaaatttacgttgatgacgagaccaagttgactctccacggtcttcaacaa
ttctacctcaagctcgaggagagggagaagaacaggaagctcaacgacttgttggacaat
cttgaattcaaccaggtctgcatctttgtcaagtctgttcaacgtgctactcagctcgat
gctctcttgcaagagtgcaacttcccctccatctgcatccactctggtcttcagcaggcc
gagcgaatctctcgattccaacagttcaaggcttttgagaagcgaattctcgttgctact
gacattttcggtcgaggtatcgatgttgagcgagtgaacgttgtcatcaactatgacgct
cccgcagatgccgactcttacctccaccgtgtcggtcgtgctggtcgattcggtaccaag
ggtcttgccatctcctttgtctctaacgacgccgaccaagaggtcctacaaaagatccag
gaacgattcaccgttgctattcccactttgcccgagactgtcgatcccgctacttacatg
acttcgtaa
DBGET
integrated database retrieval system
