Cryptococcus gattii: CGB_B5520C
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Entry
CGB_B5520C CDS
T02232
Name
(RefSeq) pre-mRNA splicing factor
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CGB_B5520C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgi03041
]
CGB_B5520C
Enzymes [BR:
cgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGB_B5520C
Spliceosome [BR:
cgi03041
]
Complex A
U2 snRNP components
U2 related factors
CGB_B5520C
Complex B
CGB_B5520C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
KH_12
TsaD
Motif
Other DBs
NCBI-GeneID:
10187544
NCBI-ProteinID:
XP_003192288
UniProt:
E6R100
LinkDB
All DBs
Position
B:complement(join(1232602..1233446,1233497..1233683,1233733..1234401,1234451..1234727,1234777..1235004,1235058..1235532,1235589..1236099))
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AA seq
1063 aa
AA seq
DB search
MPRSPYRSSNRTYRSPSPVRYDRSHPSSSSRRLDDRKASRFDDGYSRDRERDRERDRDYR
DRDRDYDRRRDRDRYRDDDRDRRRRDDRDDRRREERDRDSDRKRDSERRSPLPAIRAEPN
VSSASPAPETEEEKKRKAKERLETWKRQRALKEGKTATPESKSPAPPPVTSGLPPKPTAF
TLSRIGLPLKPTNPTPLKRSMTTLDDEDTSDRKLQKLDLPDFDPEVQSGDAAQVGSIGAD
LAVADGDEDDDAVVKKEEEKMDVDKKAEEEEEEDPLDAFMRDNVQQVVEVNKADAKRMGL
RIAEDGSDDEDRGQVVEKDKLAEAEALLQQAAAKSRKKDLPPPDHSKIDYEPFRKAFYVP
PVEVLEMDEEEAELMRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPTSI
QAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVLSPTRELA
TQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVT
NVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPNAQKVLFSATFPKTMESLARKILVKP
LEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRALIFVDRQESA
DDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVI
NYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRALEASKAFIPDDLKQM
SDSFLGKIKSGKARAAGSGYSGKGLERIERRREEKDRAEKTTYGDTSEALSLSSREGAVI
PYKAKTNEFKPPETSHKGDADYTFTEIKVDIINGPAPDRVPSQPVFNPKNAVASLPAQTL
AALEKAKKEGRGVDAANLANVVAKLTQSIELTKAEKLGLAAATSAPRLAPGARTKDPDAT
DWHAIFPINDYPQKARWKATNKEQMTLLQEVSGASITMRGRFYPPGEEPALGGEPKLSLL
IESNDEMRVRAAVEEIRRVLVEGSVQALNAVDRAGASGGRYAV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgcctagatcaccatatagatcatcgaataggacttatcgtagtccctcgcccgtccga
tatgaccgttctcacccgagctcctcttctagacgtctcgacgaccgaaaggcctcgagg
ttcgatgacggctactcgagggaccgagagagagatagggaaagggatagagactacagg
gatagagacagagattatgataggaggcgagatagggacaggtatcgtgacgatgaccga
gacagacggaggagagatgatagagatgacaggcggcgagaagagagagatcgggattct
gaccgcaagagagattctgagcgaagatctcctctgccagccattcgtgcggaaccgaat
gtatcgtcagcctcaccagctccggaaaccgaagaggagaagaaacgaaaggcaaaggag
agactagaaacttggaagcgccagcgtgccttgaaggagggcaagactgcgacacctgag
tcgaagagccctgcaccaccccccgttacctctggtctgccgcccaaaccaaccgccttt
accctctctcgtattggtcttccgctcaaacctacaaatccaacgccactcaaacgtagc
atgactactcttgacgacgaagatacatctgaccgcaaactacaaaagctagacctacct
gattttgatcctgaagtccagtcaggagatgcggctcaggtaggatccattggcgcagac
ttggcggtggcggatggcgatgaagatgatgatgcagtggttaaaaaggaggaggagaag
atggatgtagacaagaaagcggaagaagaagaggaagaggacccgttggatgcgttcatg
agagacaacgtgcagcaggttgtggaagtgaacaaggcggacgccaagcgaatggggttg
cggattgctgaggatggcagcgacgatgaagatcggggacaagttgtggagaaggataag
cttgccgaggcggaagcattgttacaacaagctgcggctaaatcacgcaagaaggatctt
cctccccctgatcattccaaaatcgactatgaacctttccgcaaagctttctacgtaccc
cctgttgaagtattggagatggatgaggaagaggctgagttaatgcgtttggaaatggat
ggtattaaaatacgaggacaagatgctccaaagccagttaggaattggggcgcctttggt
ctgcctcaaggatgtcttgacgtgatcaagcaccaaggttgggaaacacccacttccata
caagcccaggctatcccggctataatgtctggccgagacgtcattggtattgccaaaacc
ggttccggtaagactgttgctttcctcttaccaatgctccgtcacgttcgcgatcaaagg
cctgtgtccggtagtgaagggccgattgcggttgtcttgtcacctactagggagttggcc
actcagatctataaagagtgccagccctttctcaaggtgctcaacattagggcttcctgc
tgcgtcggcggttcatccattagtgaggatattgctgctatgaagaagggtgccgaagtc
gttatctgcactcctggccgaatgatcgatcttctcaccgccaataacggccgcgtcaca
aatgtacgacgcaccacctacattgttatggatgaagcggaccgaatgtttgatatgggc
tttgaacctcaagtcatgaaaattatcaataatgttagaccgaacgctcagaaggttctg
ttctcggcaacattccccaagacaatggaatcgcttgcgaggaaaatattggtgaagccc
ttggagattacagtcggaggcagaagtgttgttgcacccgaaattgaccagcgtgtcgaa
gtgcgtgatggtgatacgaagttcacacgtttgcttgaaatccttggtgagatgggcgag
gagcacaaggacgaagatgatttccgagcccttatctttgtcgaccgtcaagaaagtgcg
gatgatctatttagagaactgctacagaggggttatgtttgtgcttcactgcacggcggt
aaagagcaggtcgatcgtgatgaagctatcaaaaacttcaagaatggtgatgtgcctatc
atcgtggcgacttctgtagcggcaagaggtttggatgtaaaagagttgaagcttgtcatt
aactatgacgcacctaaccacatggaagattatgttcaccgtgctggccgaacaggtcgt
gccggtaacaaaggcacctgtataacattcatcacgccggagcaggaaagattctccgtc
gatatcgtacgagctttagaagcgagtaaggcattcatccccgatgacctgaaacagatg
tcggattcattccttggcaagatcaagtctggcaaagcgcgagctgccggtagtggatat
agtggtaaaggccttgagcgaattgaacgccgtcgggaggagaaagacagagcggaaaag
acaacctacggtgatacgtccgaagccctgtcactctcctcgcgtgagggagctgtcatc
ccctacaaagccaagacgaacgagttcaagcctccagagacctctcacaagggtgatgcc
gactatacattcacagaaattaaggttgatatcatcaatggtcctgcgcctgatcgcgtt
ccctctcaacctgtatttaatccgaagaacgccgtagcctctctgccagcacagacattg
gcggcactggagaaggcaaagaaggagggccgaggcgtagatgcggcgaatctggccaat
gtggtggccaaacttactcaatctatcgaactcaccaaagctgagaaacttggcttggct
gcagccacctctgcacctcggcttgctcctggtgcgagaacgaaagatcccgacgccacc
gactggcacgctattttccccatcaatgattaccctcaaaaggctcgttggaaggcgacc
aataaggagcagatgaccttgctacaagaagtctcaggagcaagtattacaatgcgaggc
agattttacccgcctggggaggagcctgcgttgggtggtgaacccaagctgagtttgttg
atagagagcaacgacgaaatgagagtgagggctgctgtagaagaaattcgaagggtgctg
gtagaaggatcagtacaagcgcttaatgcggttgatagggcgggtgcgagtggtggaagg
tacgctgtgtag
DBGET
integrated database retrieval system
