Cryptococcus gattii: CGB_B6620W
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Entry
CGB_B6620W CDS
T02232
Name
(RefSeq) essential RNA-binding component of cleavage and polyadenylation factor; Yth1p
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cgi
Cryptococcus gattii
Pathway
cgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CGB_B6620W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_B6620W
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_B6620W
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CGB_B6620W
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CGB_B6620W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf-CCHC
zf-CCCH_4
zf_CCCH_4
zf-CCHC_2
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
10187711
NCBI-ProteinID:
XP_003192345
UniProt:
E6R193
LinkDB
All DBs
Position
B:join(1478627..1478765,1478815..1479262,1479320..1479644,1479700..1479786)
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AA seq
332 aa
AA seq
DB search
MAAASNSAPLDPKLGRAADFVRPDFHQVNLDLENYLKTERNFKLDADQQICPLSITPLGC
PLPPSQCPYRHTTPSQLNFKPPPPLPAHPREREKKLTVCKHYLRNLCKMGDNCEYTHDFN
LRTMPECIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRMCEA
YAAGFCPDGRDCKLAHPSPNRPPPESYINPIPPDPEAFNGPPPQLPAGYGRWREYKYDPN
AVVVPAAAWVEGGSLSGWRAGGFLSANARRDNQRNRDNDDEGGRGGGGERKGGWQKDLST
VLCFRCNQYGHFANNCPNQYVPGDRGGGRRRE
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcctcgaattccgcaccattagatccaaagctcggacgagcggcagatttt
gttcgccctgatttccaccaagtcaatctcgacctggaaaactacctcaaaactgagcgc
aacttcaagctcgacgcagaccaacaaatatgtcccctgtccatcacacctctaggatgc
ccccttccgccttcacaatgtccatatcgtcacactactccctcacaactcaatttcaag
ccaccacctcctctcccggcccatcctcgagagcgagaaaagaaactaacggtctgcaag
cactatcttcgaaatctctgtaaaatgggagacaattgcgagtacacgcacgactttaac
cttcgcacgatgccagagtgtatatggtttgtcaaacaaggcaaatgtgagctgggagga
gaatgcctgtatttccatcccagagacagaagagtcgagtgtccggattacaacagagga
ttttgcgtactaggccctaattgtccgaggaagcatataaggaggagaatgtgtgaggct
tatgctgctggattttgccctgatggcagggactgcaaattagctcatccgtctcccaac
cgaccccctccagagtcatatattaaccctatcccgcctgaccccgaagcctttaatggc
ccaccaccccaactgcctgcaggctatggtcgttggcgggaatacaaatatgatcccaat
gcggtagttgttccagctgcggcgtgggttgaaggtggaagtttgtctggttggcgagct
ggaggattcctgtccgcgaatgcaagaagagataatcagaggaatagagacaatgatgat
gaaggcggacgcggtggtggaggagagagaaaaggtggctggcaaaaagaccttagcacg
gtactttgcttcaggtgcaaccagtatggccactttgccaataattgtcccaatcaatat
gtgcctggagacaggggaggcggtagacgacgggaatga
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