Cryptococcus gattii: CGB_C1160C
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Entry
CGB_C1160C CDS
T02232
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03013
Nucleocytoplasmic transport
cgi03015
mRNA surveillance pathway
cgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CGB_C1160C
09122 Translation
03013 Nucleocytoplasmic transport
CGB_C1160C
03015 mRNA surveillance pathway
CGB_C1160C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_C1160C
03041 Spliceosome [BR:
cgi03041
]
CGB_C1160C
03009 Ribosome biogenesis [BR:
cgi03009
]
CGB_C1160C
03012 Translation factors [BR:
cgi03012
]
CGB_C1160C
Enzymes [BR:
cgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGB_C1160C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CGB_C1160C
mRNA cycle factors
Stress granule specific factors
CGB_C1160C
Spliceosome [BR:
cgi03041
]
Complex C
Other components
EJC/TREX
CGB_C1160C
Ribosome biogenesis [BR:
cgi03009
]
Eukaryotic type
90S particles
Helicases
CGB_C1160C
Translation factors [BR:
cgi03012
]
Eukaryotic type
Initiation factors
eIF-4
CGB_C1160C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
10186974
NCBI-ProteinID:
XP_003192635
UniProt:
E6R2R6
LinkDB
All DBs
Position
C:complement(join(245563..245603,245659..245870,245931..246367,246415..246842,246898..246907,246991..247036,247083..247099))
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AA seq
396 aa
AA seq
DB search
MAGINVGDDKLIFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRG
RDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNV
SCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNK
GFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKE
RDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQYYSTQIDEMPMNVAELT
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggctggtatcaacgttggagacgacaagctcatattcgagtcttccgaagccgtcacg
gtcgctcccacttttgaagctctcaacttgaaagaagatctcttgcgcggtatctacgct
tacaatttcgagaaaccttccgccatccagcaacgtgcgatcatccccatcatccgtggc
cgcgatgtcattgcccaggcccaatcgggtaccggtaaaaccgccacgttttctatctca
atgcttcagtccatcgacaccaacttgcgtgagacccaagccttggtcctctccccgacc
agagaattggctgtgcagatccaaaccgttgtcctcgctctcggtgactacatgaacgtc
tcttgccatgcttgtatcggaggaacaagcgttggtgaagatattaggaagcttgaggcc
gggcaacaggttgtcagtggtactcctggccgagtgtttgacatgatccgaaggagaaac
ttgaggaccaaggacattaagatgcttattcttgacgaatctgacgaactcctcaacaag
ggtttcaaggaccaaatttacgacatctaccgataccttcctcccgccacccaggtcgtt
gttgtctccgctaccctccctcatgatgtcctcgaaatgactaccaagttcatgaccgac
cctgtccggatcctcgtaaagcgtgacgaattgactcttgaaggaatcaagcaattcttc
gtcgccgtcgaaaaggaagactggaagtttgacacgctttgtgatttgtatgacactttg
actattacgcaagcggtcattttctgtaacactcgacgcaaggtcgactggttgacagaa
aagatgcgagaggcgaactttactgtcagcagtatgcacggagaaatggtgcaaaaggaa
cgagatgcgatcatggccgaattccgaggtggacagagtcgagtattgattaccacggac
gtctgggctcgaggtatcgacgtccagcaagtttctttggtcattaattatgacctccct
acttctcgtgaaaactatttgcaccgaataggtcgaagtggtcgattcggcaggaaaggt
gtggcgatcaacttcgtcaccgtcgatgatgtcaggattttgagagatattgagcagtat
tactctactcaaatcgacgaaatgcctatgaatgttgcggagctcacataa
DBGET
integrated database retrieval system
