Cryptococcus gattii: CGB_C2240C
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Entry
CGB_C2240C CDS
T02232
Name
(RefSeq) integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) complex; Pfs2p
KO
K15542
polyadenylation factor subunit 2
Organism
cgi
Cryptococcus gattii
Pathway
cgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CGB_C2240C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_C2240C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CGB_C2240C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
eIF2A
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_Vps41
Ge1_WD40
WD40_RFWD3
B-prop_COPA_B_2nd
MIOS_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
10187129
NCBI-ProteinID:
XP_003192706
UniProt:
E6R2Z4
LinkDB
All DBs
Position
C:complement(join(448010..449321,449373..449493,449541..449886,449944..450048,450095..450163,450213..450458))
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AA seq
732 aa
AA seq
DB search
MTAPIVPSDQHGNPLPGPSKPAANGTWRPSRYLEPLHPDNEEVLEQAAYQAAVTRSSGDD
RKRKIKPRRTVDYQGGVQKWRMLNKLKGIHGFRPAIHPNPSDIVNFLPPVALQSNPSTSI
CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS
FTYSHNGQALVSTDKGGTIKYFTPHLTNIHGFQGHREACHDVSWSPNDERFVTCGDDGLV
KIWSYREAKEEKSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSSK
STINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLVS
GDALGTINYFSLLSPTPSTPLTTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRAR
PPGGQEFDKWHLSEEGAAQKELERITKREWGTGTGAGTNQSPAANAAGGGGEVALPGLSN
LVAAVNNTVKTGPTNANGPPGLPGLPGLGAPNVRTGTPPSRVSTPSSMGPPGPGGQTQTQ
SQGQGQGGQFGRGRGALPSQNDMLRHNHVPRGFADRDRSSGGDRGGMDRDRDPRGRQDPR
GNQMYGRGPGGPGGPPPGPPGQGSGPGQGGYIYPPAPPNYPPYPASSYPPPPPPPPPNNN
NNNNPSGYPPAPNYAMPPGPGGPPQHYPYNRPPQGPPQNGPGGQGNYGAPASGGYGQYGG
GGGGGYGRDGRR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgcccattgtcccctcagaccagcacggcaacccgctcccaggcccctcaaag
cccgctgccaacggcacatggcgcccgtcccgctacctcgaacccctccacccagacaac
gaagaggtcctcgaacaggctgcctaccaggccgcagtcactcgttccagcggcgacgac
aggaagcgaaagataaagcctcgaagaacagtcgactaccaaggtggcgtgcagaaatgg
agaatgttgaacaagctcaagggcatccacggattcagaccagccatacatcccaaccca
tctgacattgtcaattttcttcctcctgtagcactccagtcaaatccatccacctctata
tgtgactactgggtccacacctcgataaataaagaacgttcccctacccgtgtcgtcaga
tggacaccagacgcccggcgtctgcttacaggtaacgataagggtcaattcacactctgg
aacggtgcttctttcaactacgagtccattacgcaagtacatgacgactctatccggagc
tttacctactcgcacaacggccaagcgcttgtttcaacggacaagggcggcacgatcaag
tactttacaccgcatctgacaaatatacatgggtttcagggccatcgagaagcttgtcat
gatgttagttggagtccgaacgatgagcgtttcgttacctgtggagacgatggactggtc
aagatttggagctatagagaagccaaggaagaaaaaagtctgagtggccacggctgggat
gtgagatgcgttgattggcacccaacaaaaggtcttatcgtttccggctccaaagatatg
ctcgtcaaattctgggatccacgaacaggcaaagacctctctacgctccactcttccaaa
tccaccatcaacacatgtcgatggtcccccgatggccatctcgtggcaactgccggccaa
gattcagttatccgcctgtttgacattcgtactttccgcgagctggaagtcttaaagggc
catgaaaaagaagtcaactgcattgaatggcaccccatccatcactctttgctcgtttcc
ggcgacgcgctcggtactatcaactacttttccctcctctctcccactccatctacaccc
ctcaccacgctttcagccgctcatgaagatgcagtcttctctctctccttccatccgctt
ggccatatcctctgttcgggatcaaaggatttcacagcacgattctggtgtcgtgcaaga
ccgccgggaggacaagaatttgataaatggcatctttccgaggaaggcgctgctcaaaaa
gaacttgagcgtatcaccaaacgtgaatggggtaccggtaccggcgcggggacgaaccag
tctcctgctgcgaatgcagctggtggtggtggcgaggttgctttacctggcttatccaac
ctcgtcgcggctgtcaacaataccgtcaagactggcccgacgaatgccaatggccccccc
ggcctcccaggtcttccagggttgggtgcacccaatgttcgtacagggaccccgccgtcg
cgcgtatccacgccttcatccatgggaccacccggtcccggcggacaaacacaaacacaa
tcacaaggacaaggacaaggcggtcagtttggaagaggaagaggggcgcttcctagtcaa
aatgatatgcttcggcataatcatgtcccccgtggatttgcagatcgggataggagtagt
ggaggagacagaggcgggatggatagggatagagatccacgagggaggcaagacccaaga
ggtaatcaaatgtatggccgtggaccagggggaccgggggggcctcctcccggacctccg
ggacaaggatcaggacctggtcaaggaggatacatttacccacctgctcctcccaactat
cccccttacccggcctcatcttacccgcctcctcctcccccccccccccccaacaacaac
aacaacaacaacccatctggttatccgccagcacccaactatgctatgcctcctggacca
ggtggtccacctcaacattatccttataatcggcctccacagggacctcctcagaatggc
ccaggtgggcaagggaattatggcgctcccgcatctggtgggtatggccagtacggcggc
ggcggtggcggtgggtacggtcgggatggacggagataa
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