Cryptococcus gattii: CGB_C3450C
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Entry
CGB_C3450C CDS
T02232
Name
(RefSeq) nuclear matrix protein NMP200
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03040
Spliceosome
cgi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CGB_C3450C
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CGB_C3450C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgi03041
]
CGB_C3450C
04121 Ubiquitin system [BR:
cgi04121
]
CGB_C3450C
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_C3450C
Enzymes [BR:
cgi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
CGB_C3450C
Spliceosome [BR:
cgi03041
]
Complex B
Other components
Prp19 complex
CGB_C3450C
Complex C
Prp19-CDC5 complex
CGB_C3450C
Ubiquitin system [BR:
cgi04121
]
Ubiquitin ligases (E3)
U-box type E3
CGB_C3450C
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
CGB_C3450C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
U-box
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_IFT140_1st
WD40_like
zf-Nse
DUF1631
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
10187294
NCBI-ProteinID:
XP_003192759
UniProt:
E6R393
LinkDB
All DBs
Position
C:complement(join(730822..731821,731889..732029,732085..732171,732225..732354,732402..732470,732535..732618,732662..732677))
Genome browser
AA seq
508 aa
AA seq
DB search
MFFCAISGSPPTVPVVSKTSGAVYEKALIERYIDENGTDPVSGEPLTRDDLIDVKAKPST
MPPRPANQTSIPALLTALQSEYDSIMLESLEIKKAFQSSRQELANALYREDAATRVIARL
MKERDEARQALSSIQSTTGFQPPPAAAEEPAAEVEMAHEGALPAEVEAKVMETNQALSSV
RKKRKPAPGYKKADDIKSYTQINHVPSLHATKPAGITALDLAQDGNTVVTGGADKAVQVF
DLEASKVLGTLKGHTKAVTHVAFREHEGEPRLAISASADKTVRVWGEDDGKWGARATLSG
HKGEINGLAVHPSGSYVAAGSADSTWSLYDLVTAKEVTKYSAIPGIDGSFAYTSFAVHPD
GVLHGGGTKDGAVRVWDARQSNSLAATLSSHAKDLSTLSFSENGYYLATSSLSGAPTVNI
FDLRKLDILSSWTLPEENTIREVKFDPSAQFLSVVGTDARVYANKTWAELVTFEENAGDL
VGARFGKLGSEIVLAGMDRTLRVLGKKE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtttttctgtgctatctctggctccccccccaccgtccccgtcgtctccaagacctcg
ggcgccgtctacgaaaaagccctcatcgagcgctacatcgatgaaaacggcacagacccg
gtctcgggcgaacccctgacgagggacgatctgatcgatgtcaaggctaaaccttccacc
atgcccccccgccccgctaaccagacatccatcccggcgctcctcaccgccctccagtcc
gagtacgactccatcatgctcgagtcgctcgaaatcaaaaaggcgttccaaagctcgcgg
caagaactcgcaaacgcgctgtacagggaagacgccgccacacgcgttattgcgaggctg
atgaaggagcgagacgaagccaggcaagccttgtcttcgattcaatcgacgactggtttc
caaccaccaccagctgcggccgaagagcctgcagccgaggtcgagatggcgcacgagggt
gctttgcccgccgaggtcgaggccaaggtcatggagactaaccaggcactttcttctgtg
cgaaagaagagaaagcctgctcctggctacaaaaaggccgacgatatcaagtcatacacc
cagatcaaccacgttccctctttgcacgctaccaagcccgctggtatcacagctctcgat
ttggcgcaagacggcaacactgtggtcactggcggtgccgacaaggctgtccaagtgttt
gaccttgaagctagcaaggtgcttggtaccctcaagggccacaccaaggccgtcacccat
gtcgctttccgcgaacacgaaggcgagcccaggttggccattagcgccagtgctgataag
acggtgagggtttggggagaggacgatggtaaatggggagcgagggcgacactgtctggt
cacaagggcgaaatcaatggacttgctgtccacccttccggttcctatgtcgccgctggt
tctgccgattccacttggagtctgtatgacctcgtcaccgccaaggaagtcaccaagtac
tctgctattcccggtatcgacggttcttttgcttatacttcatttgctgttcaccctgat
ggcgtgttgcatggcggaggtaccaaggacggcgccgttcgagtctgggacgctcgtcaa
tccaactcgctcgccgccacactctcttcccacgctaaagacctttctaccctttcattc
tctgaaaacggatactacctcgccacctcctccctctctggtgcccccaccgtcaatatc
tttgaccttcgtaaactcgacatcctctcatcctggacgttgccagaggaaaacactatt
cgtgaagtcaagtttgacccgtctgcgcagttcctcagcgtggtgggtaccgacgcgcga
gtgtacgccaacaagacgtgggcagagttggtcacgtttgaggagaatgcgggtgatttg
gtgggtgcgaggtttggaaagttgggtagcgagattgtgctcgcaggcatggacaggacg
ttgagagtcttggggaaaaaggagtaa
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integrated database retrieval system
