Cryptococcus gattii: CGB_C4410W
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Entry
CGB_C4410W CDS
T02232
Name
(RefSeq) ATP-dependent RNA helicase of the SFI superfamily Nam7p
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cgi
Cryptococcus gattii
Pathway
cgi03013
Nucleocytoplasmic transport
cgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CGB_C4410W
03015 mRNA surveillance pathway
CGB_C4410W
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_C4410W
Enzymes [BR:
cgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CGB_C4410W
5.6.2.5 RNA 5'-3' helicase
CGB_C4410W
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CGB_C4410W
mRNA cycle factors
Common to processing body (P body) and stress granule
CGB_C4410W
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
UvrD-helicase
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
AAA_22
Helicase_RecD
AAA_16
nSTAND3
PhoH
ATPase
AAA_25
T2SSE
Motif
Other DBs
NCBI-GeneID:
10187440
NCBI-ProteinID:
XP_003192804
UniProt:
E6R3F9
LinkDB
All DBs
Position
C:join(930154..930186,930261..930481,930537..930573,930629..930767,930817..930898,930948..931202,931255..931589,931642..931808,931865..932474,932550..933259,933319..933463,933569..934128)
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AA seq
1097 aa
AA seq
DB search
MEFSNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQLGDLHLGETTSGHAAVG
QGYIDDFDEEIERNSFGEGVEHACSYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNH
LVKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSS
RDINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLED
AEAQSGEEEMQPILLKYEDAYQYQNILGPLVKIEADYDKRMKESQTENDITIRWDMGLNQ
KRLAWFCMPKLESGEVRLAVGDELKLKFAGTTNSVGIKGLQAFNKGGWGSSGDAVWEGVG
SVVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVS
GYIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGK
TVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRLAAKSREALDSSVDF
LSLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVRACEKDILNAADVICTTCV
GAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARA
GLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFP
WPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEG
QRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR
MNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKK
SLAAAMDPFKRHVGHGQGQSSATSRFDPAYYRTHNPLSFIPPDAQSVVSQALTSSAFPLF
GGGSGSAGGGGVGGVGGVGGGGGVGGKNKTYTGYASSVISQQPMDGGNAHGHNHLPPRVA
GQSQFDRFANVGGDNMMGMGMGMGMGMGMGMGMGMGKGRRLSIGSEAASASMYAYGYKAG
EDDTQSIAPSQAGMTEF
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggagttttccaactttgaaggggcatcacagtacggtccagacatcgatgacaacact
tcattatactcgtcaatcccgccttcggtagtgacagcgccaactatcagtggcgatatt
gctagtcagctaggcgaccttcatctcggcgagactacgtcagggcatgcggcggtcggt
caaggctatattgacgactttgacgaagaaatagagcgaaattcatttggagaaggggta
gagcacgcttgcagctactgtggtattcataatccccaatgtgttgtaaagtgtcttcac
tgtaataagtggttctgcaattctcgtggcaatacatctgcctcgcatatcgtaaaccat
ctggtcaaagcgaagcacaaagaagtgatactacacaaggaaagcgctcttggagatacc
atcccagaatgttacaactgtggcagtaaaaatgtgttcatgctaggatttattcccgcg
aaaagtgatactgtcgttgttttactctgccggcaaccctgtgcagctctgacaagctcc
cgggatatcaactgggacacctctcagtggtcagccatcattgacgatcgtcaatttctg
tcctggctcgtcaaggtaccatcagaggctgagcagcttcgagcgaggcaaatttcttta
gcccagatatcaaaacttgaagaactttggagagaaaatcccaatgcaaaacttgaggat
gcggaggctcagtctggtgaggaggagatgcaaccgatcttgctcaaatatgaggacgcg
tatcaatatcagaacattcttgggcctctagtcaagattgaagctgactatgacaagcgc
atgaaagaatcacaaactgagaatgatatcacgatacgatgggatatgggtctcaatcag
aagcgtcttgcttggttttgcatgccgaagctagaaagcggagaggtgagattggcggta
ggtgacgagctgaagctcaaatttgcggggacgaccaacagcgtcgggatcaagggtctc
caggcgttcaacaaagggggttggggaagttctggggatgctgtgtgggagggagttggt
agcgtcgtcaagataccgaacaatgcatcggacgaaatctgcttggagcttcgaaggaac
gacggagtgccttttgactgcactcatggcttctctgtcgactttatctggaaatcaacc
agtttcgacaggatgcaggcagccatgaaaacgtttgccattgacgagaagagtgtcagc
ggctatatctatcataaactgctcggacacgaagttgaaccccaagtactgcgtacccaa
atgcccaaacgttttgctgcacctaatcttccggagctcaaccactcgcaaatgtctgcc
gtcaaggcggtattgcaaaaaccgctgagtctcatccaaggccctccaggtaccggaaaa
acggtaacttctgcttctatcgtgtatcacctcgccaagatgaaccctggtcaggttttg
gtatgcgcgccttccaacgtagctgttgatcatctttgcgaaaagattcaccagacgggt
ctcaaggtcgtacgattagcagccaaatcacgagaagcgctcgattcatcggttgacttc
ctttctctccacagtcaagtagccaatgcggacacacaccacgagttgcagaaacttatt
cagctgagaaatgaccaaggtgaattaagtcagagcgacgaaagaaagtataaagcattg
gtcagagcgtgtgagaaggacattttgaacgcggcagatgttatttgcactacctgtgtc
ggtgctggcgatcccaggttggccaagtttaaatttagaacagttttgatcgatgaagct
actcaatctgccgagcctgaatgtatgatccctcttgttatggggtgtaagcaagctgta
cttgtaggagatcaccaacaattgggacctgttattatgaacaagaaagcagctcgagct
ggtctttcccaatcgctgtttgaacgactcgtcatcctgggcaaccaccctatccgactg
caggtgcaataccggatgcacccctgcctttccgagttttcatccaacttgttctacgag
ggcactttgcagaatggtgtcacggcgccagaaaggctgcgtaagaatgtagatttcccc
tggccagttgcggacactcccatgttcttccatcagaaccttggtacggaggaaatatca
tccagcggaacatctttcctcaaccgaaccgaagcttccaatgttgaaaagatggtgacc
aagtttttcaagtctggtgtcttgcccaatcaaattggtgttattacgccttatgaagga
cagcgatcatacattgcgtcgtacatgcagctgcacggctcgctgaaaaaggatctgtac
aaagaggtcgaggtggcgagtgtggatgcgttccagggacgtgagaaggattatatcatt
ttgagttgtgtgaggagcaatgagcaccagggtattggatttttaaatgatcctagacgg
atgaacgtggctcttacccgtgccaagtacggcgtcgtgatattgggtaatccaaaggtg
ttgagcaagcaccctctttggctctacctcctttctcactacaaggagaagggatgcttt
gttgaaggtcctctcagtaaccttcagccgagtatggtccagttcagccgaccgaaaaaa
tctttagcggcggctatggacccttttaagagacatgtcggccacggacaaggacaatca
tccgccacgagccgtttcgaccctgcgtattaccgcacccataaccctctttcatttatc
ccgcctgatgctcagtcggttgtcagccaagcattgaccagctctgcattcccattattc
ggcggtggcagcggcagcgctgggggtggtggggtagggggggtagggggggttggtggc
ggtgggggggtaggggggaagaacaagacgtatacgggatacgcatcaagtgttatctct
caacaacccatggacggcggaaacgcccacggccacaaccatttacctcctagggtagct
ggccaatcacaatttgacaggtttgccaatgtcggtggggacaacatgatgggaatggga
atggggatggggatggggatgggcatgggcatgggcatggggatggggaaggggaggcgg
ctttcgatcgggagcgaagcggcaagcgcgtcgatgtatgcgtacggttacaaggcgggc
gaagatgatacgcagagtatcgcaccaagccaggctggaatgaccgagttttag
DBGET
integrated database retrieval system
