Cryptococcus gattii: CGB_J1160C
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Entry
CGB_J1160C CDS
T02232
Name
(RefSeq) U6 snRNA binding protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cgi
Cryptococcus gattii
Pathway
cgi03018
RNA degradation
cgi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CGB_J1160C
09123 Folding, sorting and degradation
03018 RNA degradation
CGB_J1160C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_J1160C
03041 Spliceosome [BR:
cgi03041
]
CGB_J1160C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CGB_J1160C
mRNA degradation factors
5'-3' decay
Lsm complex
CGB_J1160C
Spliceosome [BR:
cgi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CGB_J1160C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
10186786
NCBI-ProteinID:
XP_003196443
UniProt:
E6RCQ3
LinkDB
All DBs
Position
J:complement(join(213551..213584,213641..213731,213786..213857,213976..214102,214206..214217))
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AA seq
111 aa
AA seq
DB search
MSSRGGRGGARGGGNQGGERKKRESILNLAQFVDKSIRVKFMGGREATGILKGYDQLMNL
VMDDVVEEYEDGRPTRSLGLVVLRGPNIVLVSPTDGSSGKSNRKPFPTIIM
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaagaggcggccgaggcggagctcgtggcggtggtaaccaagggggtgaacgt
aagaagcgagagtcaatcctcaacttggctcaatttgtcgacaagagtatcagggtcaag
tttatgggtggacgggaagctaccggtatcttgaaaggctacgaccagcttatgaacttg
gtcatggacgatgtagttgaagagtatgaggatggccgacctacacgaagtcttggatta
gttgttctccgtggccccaatattgtccttgtcagcccaacggacggatcgtcaggcaag
tcaaatcgaaaaccctttccaacaataataatgtag
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