Cryptococcus gattii: CGB_M0140C
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Entry
CGB_M0140C CDS
T02232
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
cgi
Cryptococcus gattii
Pathway
cgi03022
Basal transcription factors
cgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CGB_M0140C
09124 Replication and repair
03420 Nucleotide excision repair
CGB_M0140C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgi03021
]
CGB_M0140C
03400 DNA repair and recombination proteins [BR:
cgi03400
]
CGB_M0140C
Transcription machinery [BR:
cgi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CGB_M0140C
DNA repair and recombination proteins [BR:
cgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CGB_M0140C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
10185871
NCBI-ProteinID:
XP_003197226
UniProt:
E6REY9
LinkDB
All DBs
Position
M:complement(join(34680..34769,34921..35008,35116..35260,35315..35387,35550..35665,35726..36185))
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AA seq
323 aa
AA seq
DB search
MPSPPSTLIVILDTHPLSWHLLSHLPPAPPIPDNKVLDTAKSSPTSLHQFITILIVFLNA
HLASKWGNEVVVYTASAGKATLIYPPSNDKLRQRGEGGKPNANVYRPFQVLDERIEEGLK
EVVREEQQKLDTEGPGFINEPPAMVSALTKALCFINRRILSSAHNDPTALPPSSDPNNNN
GDTSGGLLPSKERRQQRMRGGYVGLMNCVFAAQKAAKSPDRYPLPSSIYDRFFSSRLLTT
SRPSDRWSVLAMEWKRGFAPVSPCTIYISHRLLFDIIRSSRRHRTQSTFVQCVSSFVNQN
PSAQCVKHGSLSNLSPHSGRWPG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcccccccctccacgctcatcgtcatcctcgacacccaccccctctcatggcat
ctcctctcacatctccccccagcaccccccatcccggacaacaaggttctcgacacggcc
aaatcatcccccacatctctccaccagttcatcaccatcctcatcgtctttctcaacgcc
catctcgcaagcaaatggggcaatgaagtcgtcgtctatacggcttccgctggaaaggca
actttgatttaccccccttcaaatgacaagttacggcaaaggggagaaggaggaaagccg
aatgcgaatgtgtacagaccgttccaggttttggacgagaggattgaagaaggactgaaa
gaggttgtgagagaagaacaacagaaattggataccgagggtccggggtttataaacgaa
ccacccgccatggtctcggcgcttacaaaagctctatgcttcatcaatcggcggatatta
tcttcggcgcataatgaccctacagccctcccaccctcttcggatccaaataacaacaac
ggggatacttctggcggccttttaccaagtaaagaaagacggcagcaacgcatgcgtggt
ggttacgtcggactaatgaactgcgtctttgccgctcaaaaagctgcaaaaagtcccgat
agatatcctctcccttcctccatctacgatcgattcttctcctcccgtcttcttacaaca
agccgcccatctgacagatggagtgtactggcaatggaatggaagagggggtttgctcca
gtatctccatgtacaatatatatctcacaccgccttctcttcgacatcatccgttcgtca
cgccgccacaggacgcagtcaactttcgtgcagtgtgtttcttcttttgtgaaccaaaac
ccatctgcgcaatgtgtaaaacacggttccctatcaaatctatccccacactccggacgt
tggccgggttga
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integrated database retrieval system
