Carassius gibelio (silver crucian carp): 127933498
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Entry
127933498 CDS
T08819
Name
(RefSeq) nuclear exosome regulator NRDE2-like isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127933498
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127933498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
Suf
TPR_19
TPR_12
TPR_2
Motif
Other DBs
NCBI-GeneID:
127933498
NCBI-ProteinID:
XP_052386490
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All DBs
Position
A17:complement(15538126..15552331)
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AA seq
1158 aa
AA seq
DB search
MALFPSCAELSSNNSSTGDRAPADLEWLSNQSFNKEDALKTHQRATERAQAEAEEPAGIR
EQKHKEREDSHGRSKKRKKEKKKKQKKKKSRDNSESSGSESDTVYPSDLLKKDADREEAQ
VRVSETFMWLDDLQTPSDSPFCIDRRADRANWEYKSLYRGDIARYKRKGCSCLGLDFRMQ
AVNWNDGGPEKKRVDKKPERYFCLSTRQLLRSDPLSLPALPVLSEGSAVSTESYIKLSAC
SVEQGSSTQAPVSWVNPLGIYDRGTSLWLEGKGQPEVKGDQPDVEAQGSSSSSLLSARVE
EFNRKLRENPTDTQLWLDFIHFQDELAFGSGSFSAAGDTDNEGDMKKMSLRAVLEKKLSI
VDKAVESNPASVELKLKKLHLCKELWEPATLQKEWKKLVFIHPNSAPLWKKYLLFTQSLF
STFSVSKVNSVFGKCLSTLSPVQDGSMVSHPPLPGTQEDLLDIFLQQCHFLRQAGHTEKA
VCLFQALLDFTFFKPDSVKDLPTRQQVDFFEPFWDSGEPRVGERGARGWKAWMLQQERGG
WVIPSEPDDDDEEEQDDSEIKDKTWPKWKIWLDVEASREANHWLPWRPDKTKGQSEEDCE
DPDRQVLFDDIGPSLIRVDRPDLQLQLILSFLQFLGLPGPSGKFSTTSSSNILLDDLTFL
EEGPDPERPLTSYDLSMAGICAVGHMTFLRDCRRQAGLCKAGEEFLQNVLQQTLQLISAQ
DQAAVTLCWLQYEKLKVLRCLRSGNKRRLKSQGKRSKRLAKRLLKEPDNRGSLALWREYA
HLEWLLGNLEEARKVFDTALAMGVTRGLNDPVLCNLCFLYAQLEVEQALNSGTVPTSKAV
YILTKLAEGAAYTPFSGQINPVTILKARKAYEQALLSFSPEQSTGTNARAPKKLHRMSSL
VGCFGLFQYLTVGIDAADAVYNQATQNLISWNLNSEVTDGSLRRPKVFADWESVAVQHVA
LLRHHANTNVFPLSRLRLALTDALSLLPSSASLWQLYLQTENRYHSAGRARRFFHSVAKK
TDSVVPYLFAITAEQRLKQMLDSVQRSHLPGEALPALPNNGLSNRIRCLFENATATEHGA
HCPLLWRMYLIFMVCDGNAERGSGIFYKALQAVPWVKGLYMDAVQLFPERVQEFLDLMTE
KELRLRVPMEEVDILLED
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccgtcctgcgctgaactgtcaagcaataacagctctactggggataga
gctccagcagatttggaatggctgagtaatcagagcttcaacaaagaagatgctttgaag
actcaccagcgggccacagagagagcgcaagcagaggcagaagaaccagcaggcataaga
gagcagaagcataaagagagagaagatagccatggcagatcgaagaagagaaagaaagaa
aagaagaaaaagcagaagaagaagaagagcagagataactcggagagcagtggatctgaa
tcagacacagtttaccccagcgacctgctgaaaaaggatgctgacagagaggaagctcaa
gttcgggtgagcgagacctttatgtggctggatgacctccagaccccctctgactccccc
ttctgtattgacagaagagctgaccgtgccaactgggaatataaatccctttatcgggga
gacatagcaaggtataagaggaagggatgctcatgcctggggcttgacttcaggatgcaa
gctgtgaactggaacgatggaggcccagagaagaagcgagtggacaagaaacccgagcgc
tatttctgtctttccacccgtcagctgctccgttcagatccgttgagtctgcctgctttg
cctgtactctctgagggcagtgctgtcagcactgaatcctacattaagctctcagcctgc
agtgtagagcagggctcttccactcaggcacccgtatcatgggtaaatccactgggcatc
tatgaccgtggaacctctctatggctggagggcaagggtcaaccagaggtcaagggagat
cagccggatgttgaggctcaagggagcagcagcagctcccttctgagtgcacgggtggaa
gagtttaacaggaagctacgggagaatcccacagacacccagctgtggctggactttata
cacttccaggatgaactggcctttggttcggggtcattctctgctgccggtgacactgac
aatgagggtgacatgaagaagatgtctcttcgtgccgtgctggagaagaagctgtccatt
gtggacaaggcagtggaaagtaaccctgccagcgtggagctgaaactaaagaaactccac
ctttgcaaggaactatgggagcctgccaccctgcagaaagagtggaagaaactagtgttc
atccatccaaacagcgcacctttatggaagaagtatcttctcttcacacagagtcttttc
agcactttctcagtgtcaaaggtcaacagcgtgttcggaaagtgtttaagcacgctcagt
ccagtccaagatggcagcatggtatctcaccctccacttccaggcacccaggaagacctc
ttagatatctttctacaacagtgccatttcctgcggcaggcaggtcatacagagaaagct
gtgtgtctcttccaagcccttctggacttcactttcttcaagccagacagtgtgaaggac
ctgcccactagacaacaggtggatttttttgagcctttttgggacagtggagagcccagg
gtcggggaacggggggctcggggatggaaggcttggatgcttcagcaggagagaggagga
tgggtgattccatctgagccagatgatgatgatgaagaagagcaggacgactccgagatc
aaagacaagacctggcctaagtggaagatctggttggatgtggaggcgtcccgagaggca
aaccactggttgccatggagaccagataaaaccaagggccaatcagaggaggactgtgag
gaccccgataggcaggtcttgtttgatgatattggcccatctctgattcgtgtggacaga
ccagatcttcagctacagttgatcctgtcattcctgcagttcctaggtctgcctggacct
tcagggaagttctctacaacatcttcctcaaacattctactggacgatctaaccttcctt
gaggagggcccagacccggagcgaccgctgacctcttatgacctctcaatggctgggatc
tgtgcagtgggtcacatgacatttctgagggactgcaggaggcaggcagggctgtgtaag
gcaggggaggagtttctccagaacgttctacagcaaactctccaactcatctccgcacag
gatcaagctgctgttacgctctgctggctgcagtatgagaaactaaaggtgctgagatgt
ttacgaagtggaaataaaaggcgactgaagtctcaggggaagcgtagtaaacggctagcg
aagcgactgctaaaagagccagataacagaggcagtctggcactttggagagagtatgca
catctggagtggcttctgggtaatctggaagaggcacgcaaagtatttgacactgccttg
gccatgggcgtgactagaggtcttaatgatcctgttctctgtaatctctgttttctctat
gcccagttagaggtagagcaggccttaaacagtgggacagtccccacgtccaaagctgtc
tacattctcactaaattagctgagggtgctgcctatacacctttctctggccaaatcaac
ccagtgactatcctgaaggccagaaaggcctatgagcaggccctattgagcttttcacct
gagcagagcacaggcaccaatgctagagctccaaagaaactccacagaatgtccagccta
gttggatgttttgggctttttcagtacctcactgttgggatagatgcagctgatgctgtg
tacaatcaggccacccaaaacctgatttcctggaacctgaattcagaagtgacagatgga
tctctgaggagacccaaggtctttgcagactgggagtctgttgctgtccagcatgtagca
ctgctgcgccaccacgccaacaccaatgtgtttcctctctcccggcttagactggccctt
acagatgccctctccttactgccctccagcgcctcattatggcaactctaccttcaaaca
gagaaccgctatcacagcgcaggccgtgcccgcaggtttttccacagtgtggcaaagaaa
actgacagtgttgtgccgtatctttttgccattactgcagagcaacgactcaaacagatg
ctggactctgttcagaggtctcatcttcctggagaagccctgcctgccctgccaaataat
ggtcttagcaaccgtatccgttgtctgtttgaaaatgctacggcaacagaacatggggcc
cattgtcctctgctgtggaggatgtatctgatcttcatggtatgtgatgggaatgcagag
aggggcagtggaatcttctacaaggccctacaggcagtgccctgggtaaagggcttgtac
atggacgcagtgcagctgtttcctgaacgtgtgcaagagtttttagaccttatgactgag
aaggagttgcgtctgagagtgcccatggaggaggtggacatcttgctggaggactag
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