Carassius gibelio (silver crucian carp): 127934274
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Entry
127934274 CDS
T08819
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127934274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127934274
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127934274
mRNA degradation factors
5'-3' decay
Decapping complex
127934274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WD40_Prp19
Pdc1_Ge1
WDR55
Phage_min_cap2
EIF3I
Motif
Other DBs
NCBI-GeneID:
127934274
NCBI-ProteinID:
XP_052387503
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All DBs
Position
A18:complement(10648064..10673662)
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AA seq
1411 aa
AA seq
DB search
MDTSSNMDIEGATQHLRDILKLDRPGNSAESSLVESQRKPSFNGEMNGVLGADLMGAGLM
EPTTHNSDKLNGQDTQTICLSGDDGSTCVPIRANNVEIVSSRDSSIDSKARGSNKVKIQP
VAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNHSMIRVLRLGSTERSLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLFIWQLTSHNSKIQDEVFVHIRRPEDTPLNSNRRLIWCPFIPE
DNDESPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATDLKEGFITIRGHTARISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSKCSYDEHKRLISKTQNLTNEPTKRCLHE
WQPQNGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPD
PFNSSVLPSLKASLDLSAEFLILSDVQRKVLYVMELLQDQEQGRASFTAVSEFLLTHPVL
SFGIQDVARTRLRHTEVLPPDEESESMTTEGNQGPSESKSGIQIKLYCVHTKSLQDVQIW
FQPNQGASSSLFMPQSGSQDGFGFSDPLADLNVEAMSSDKESGDSGSHNDLSKILALPTP
ADFMSPAPSALPKLMTPDAFMTPSTSMPASPGSSASSLTIVTAMSSSDSGARGGDDLAQS
PKMSVECGNSSLTLSASAGSPRSNSILISGLGENLQVSPPNPPLSLDLQAIEPMVVPQAS
PTRARSPDVISSASTAMSQDIPEIASETLQRGLASAAADSNPVLHSDSMASAASVLHLLS
PRARSSAEHSLLPLELGAASVDGEQRLNNTPSLLETALSQENAVAAGGSCSDSSVNHTWP
AAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRTYHLTQNDSQDASAEQSDHDDE
VASLASSSGNCGPRSSHRLPVKDWKTSPRSSPKLKRKSKKDEGESSQPRQIENQMSTEVQ
DELLQMLRSQQREIAELRQNQLDLLQRVTCHMDAVQSSIMAHIEHAMLAQQEQEQRRMER
ILAEGQSRNQQLQDQLVQQLVQTLNNSLCNRLDKVLREEMKKTVPQTISKSLEPVTSQLN
STIAAKLTAVEGTLKENVTKVVKSKNTTDAIGRAAAEAMQGPIQSAYKETFQGIVLPVFE
RGCQSMFQQINDSFKQGTHEYIQQLETHIKNRKQQDQDARDPVIGQLQQMMDTLQSSQDQ
LATTVTASVCSDVQRQLHMIVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMR
SAAGTPVPSAHLDYQAQQASILQLLQQGQLNEAFQQALSAADLNLVLYVCETIDSQQVFG
QQPCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMNLDHGDPVTRDHMSAVLTQVRQ
KLLHFLQQDAHSPLSKRARRLMMMLQGLVNH
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atggataccagttccaacatggacatagaaggcgcgacccagcaccttcgggacatctta
aaactggatcgtcccggtaattcggccgagtcatcattggtagaaagccagagaaaacca
tctttcaatggagagatgaatggtgttcttggagcagatcttatgggagcaggactgatg
gagccaactactcacaactcagacaaacttaatggacaggacacgcagactatctgtctt
tcaggagacgatgggtccacctgtgtccccatcagagcaaacaatgtggaaattgtgtcc
agtcgtgactctagtattgacagtaaggctcgaggcagcaacaaggttaaaattcagcca
gtggccaaatatgactgggagcacaaatactactatggcaatttaatagctgtgtccaac
tcttacttggcttatgccatcagaggcgcaaacaatcattctatgatccgagtgctgcgg
ctgggatcaacggagcgttcgctgctgaagggcttcacaggtgcagtcacagaccttgct
ttcgcccacttggactccaccctgttgggctgcgtggatgaggctggaaacttgttcatt
tggcagctcacaagccacaacagcaaaatacaagatgaagtgtttgttcacatccgaagg
cctgaggacactccactaaattccaaccgcagactcatctggtgtcccttcatcccggag
gacaatgatgagagcccagaggatgcgtgtcagacattggcactccttcatgaagacaga
gctgaggtttgggaccttgacatcctccgatccaataacagctcgtggcctgtggatgcc
actgacctgaaagagggtttcattaccattagaggacacacggcacgcattagtgaggga
gcactgtcccctgatggcactgtcttggccacagccagtcatgatggatatgtaaagttt
tggcaaatctacattgaaggacaggaccagcccagtaaatgcagctatgatgagcataag
agactgatttcaaaaacacaaaatcttaccaacgaaccaaccaaacgatgcctgcatgaa
tggcagccacaaaacggacggcctctttcctgcctgctcttttgtgacaaccacaagaag
caagacccagaagttcctttttggcgcttcctgatcactggagctgatcagaaccaggaa
ctgaagatgtggtgcacagtgtcatggacgtgcttacaaaccatcaggttctctccagat
ccattcaacagcagtgtgctacccagcctgaaggccagtttggacctgtctgcagaattt
ctcattctcagtgatgttcagaggaaggtgttgtacgtcatggagctgctacaggatcag
gaacaaggccgtgccagcttcactgcagtttcagaatttctgcttacacaccctgtgctc
agcttcggcatacaggatgtggcccgcacccgactgcgccacactgaggtccttccacct
gatgaggaaagcgaaagcatgacgacagaaggaaaccagggaccctccgagtccaaatca
ggaatccagattaaactctactgcgtgcatacaaaatcactacaggatgtgcagatctgg
ttccagcccaatcagggggcctcatcctccctcttcatgcctcagtctgggtcccaggat
ggctttggtttttctgacccactggctgatctgaacgtggaggcaatgagctctgataag
gagtctggtgatagtggatcacataatgacctgagtaagattctggctcttccaactcca
gctgacttcatgagtccagccccttcagccttgcccaaactcatgaccccagatgccttc
atgacgcccagcacctccatgcctgcttctcctggcagcagtgcaagcagcctgaccata
gtcacggccatgagcagctcagatagcggtgcaagaggtggagatgatctggctcagagc
cctaaaatgtctgttgaatgtggcaacagcagcttgactctgagtgccagcgcaggcagc
ccaagatccaactctatcctcatctcaggccttggggaaaatcttcaggtttccccccca
aaccctcctctctccctggatctccaggccatagagcccatggttgtcccccaggcctct
ccaaccagagctcgctctccagatgttatctcctctgcttctacggcaatgtcccaggac
atccccgagatcgcctcagagaccctgcagagggggctggccagtgccgctgctgactca
aaccctgtcctgcattctgacagcatggcatcagccgcatcagtcctccacctgttgtct
cctagagcccggagcagtgctgagcacagtttgctgcctctcgaattgggtgcagcatct
gtggatggagaacagagactcaataacacaccttcactgctggagacggctctgtcacag
gagaacgcggtagctgctggaggatcctgttctgacagcagtgtgaaccacacctggccc
gcagcacctgatatcacacgagaaactcgcaacagcctcagagacaatggtttgggagac
tgctctagggaggaaataaaggacagacacatttcttctccctaccacagacgcacttat
cacctgactcagaatgacagtcaagatgcaagtgcagagcagagtgatcatgatgatgag
gttgccagtctggcctcttcctcggggaactgtggccctcgctcctctcacagacttccc
gtaaaggactggaaaacatctccgcgcagctcccctaagctcaagaggaagagcaagaag
gatgaaggagagtcctcacagcctcgacagattgagaaccagatgagcacagaggtgcag
gatgagcttctacagatgttacggagccagcaaagggagatcgctgagctgagacagaac
cagctggaccttctgcagagagtcacctgtcacatggacgctgttcagagctccatcatg
gctcacattgagcacgccatgttggctcagcaggagcaagaacagagaagaatggagcgg
attctggctgaaggacaaagccgaaaccaacagctccaggaccagctggttcagcagctt
gtccagacactgaacaacagtctctgcaatcggctagacaaagttttgcgtgaagaaatg
aagaagaccgtcccacagacaatatcgaagagtctagaacctgtgaccagccagttgaac
agcaccattgctgccaagttaaccgcagtagaaggaacactgaaggaaaatgtcaccaaa
gttgttaaatccaagaacactacggatgctatcggccgtgctgcagctgaggccatgcag
ggtcccatccagtcagcctacaaagagaccttccagggcattgtgctgcccgtgtttgag
agaggctgccagtccatgtttcagcaaatcaatgacagcttcaaacagggaacacacgag
tacatccaacagctggagacacacattaagaacaggaaacagcaggaccaggatgcacgg
gatcccgtgattggtcagctgcaacagatgatggacacgctccagagttctcaagaccag
ctggccaccactgtgacggccagcgtgtgctctgatgtccagcgtcagctccacatgatc
gtgggaaatctgcaggactcaatcctgacgcaggtacagcgcatagtgaagggagaggtg
agtctggccatgaaggagcagcaggcagctgtcacctccagcatcatgcaggccatgcgc
tcggccgcaggaacacctgtaccctctgcacatctggactaccaggcccagcaggccagc
atactgcagttactacagcagggccagctcaatgaggccttccaacaggctttatccgca
gcagacttgaatctggtgctgtatgtgtgcgagaccattgactcccagcaagtatttggc
cagcagccctgtccactgcatcaggccgtccttctgtctctcatccagcagctctccacc
aacctgagcacacgcacagaactcaagatcagctatcttgaagatgctgtaatgaacctg
gaccatggagatccagtcaccagagaccacatgtctgcagtgctgacccaggtacgacag
aagctcttacacttcctgcagcaggacgcccacagccctctgagcaagcgcgcacggcgc
ctcatgatgatgctgcagggcctggtcaatcactag
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integrated database retrieval system
