Carassius gibelio (silver crucian carp): 127934571
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Entry
127934571 CDS
T08819
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03420
Nucleotide excision repair
cgib04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127934571
09124 Replication and repair
03420 Nucleotide excision repair
127934571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
127934571
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127934571
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
127934571
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
127934571
TCR (transcription coupled repair) factors
Cul4-CSA complex
127934571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
127934571
NCBI-ProteinID:
XP_052388009
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All DBs
Position
A18:26693118..26722973
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AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESGRN
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSVSVRLVT
QDSKALVSEWKEPQGRNISVASCNSTQVVLAVGRVLYYLQILTGELKQISSTEMEHEVAC
LDITPLGESAGESSICAVGLWTDISARLLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDASGTTAAVRSSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFSGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKQMEGSFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSESWYSLLLDLQIRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRVKMQEVVSTLQMDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccgacggcggtgaacgcctgtatcacg
ggtcacttcacttctgcggaggatctgaacctgctgatcgccaagaacacgcgtctggag
atctatgtggtcactgctgagggtctgcggccggtcaaagaggtcggcatgtacggcaag
atcgctgtcatggagctcttcagacccaagggtgagagcaaagatcttctgttcattctg
accgctaaatacaacgcctgtatcctggagtacaagcagaacggagacagcatcgacatc
atcacccgcgctcacggaaacgtgcaggatcggatcggccgtccgtctgagaccgggatc
atcgggatcgtggatccggagtgtcgtatgatcggcttgcggctgtacgatgggctgttt
aaggtcattcctctggaccgtgataaccgcgagctcaaagccttcaacattcgtctggag
gagctgcaggtcatagatgtccagttcctgtatggctgccaggcgcccaccgtctgcttc
atatatcaggatcctcagggtcggcacgtcaagacatacgaggtttctctcagagagaag
gagttcaacaaaggaccctggaagcaggagaacgtggaagctgaagcatcgatggtcatc
ccagtcccagagccgtttggaggagctataatcatcggacaggagtccatcacttatcac
aacggagacaaatacttagccatcgctcctccaactatcaagcaaagcaccatcgtgtgt
cataaccgcgtggatccgaacggctcgcggtacctgctgggagacatggagggacgactc
ttcatgctgctgttggagaaagaggagctgatggacggagctgtggtgctcaaagacctg
cacgtggagctgctgggagagacctccatcgccgagtgtctgacgtatctggacaacggt
gtggtgtttgtgggctccagacttggagattctcaactagttaagctgaatgtggacagt
aatgaccagggttcgtatgtggctgtaatggagaccttcactaacctggggccgatagtg
gacatgtgtgtggtggacctggagagacaaggacagggtcagctggtgacgtgctccgga
gcgtttaaggaaggctctctccggatcattcggaatggcatcgggatccatgagcacgcc
agcatcgacctgcccggcatcaaaggtctgtggcctctccgctccgagtcgggcagaaac
actgatgacatgctggttctgtcttttgtgggtcagaccagggtgctgatgctgagtgga
gaggaggtggaggagacggagctgccggggtttgtggataatcagcagacgttcttctgt
gggaatgtagcgcatcagcagctcatacagatcacgtcggtgtctgtgaggctggtcact
caggacagcaaggctctggtgagcgagtggaaggagcctcagggcaggaacatcagcgtg
gcgtcctgcaacagcactcaggtggttctggctgtgggtcgagtgctgtattaccttcag
atcctcacaggagaactcaaacagatcagctctacagagatggagcatgaggtggcgtgt
ctggacatcactcctctgggcgagagcgcaggagaatccagcatctgtgctgtgggactc
tggaccgacatctcagcacgcctgctcaagttaccctgcttcagcccgctgcacaaagag
atgctgggcggagagatcatccctcgctccatcctcatgaccacgtttgagggcagtcat
tacctgctgtgtgcgctgggagacggggcgcttttctatttcggactggacattcagaca
ggtgttttgagtgagcgtaagaaggtgactctgggcactcagcccacggttctgcgcacc
ttccgctcgctctccacctccaatgtgttcgcctgctccgaccggcccaccgtcatctac
tccagcaaccacaaactggtcttctctaacgtcaacctgaaggaggtcaactacatgtgc
ccgctcaactccgagggataccccgacagtctggctctggccaacaacagcacactgacc
atcggcaccatcgacgagatccagaagctccacatcagaaccgttcctctctacgagtcg
cccaagcggatctgctatcaggaagtgtctcagtgtttcggagttttgtccagtagagta
gagatgcaggacgccagcgggacaacagcagccgtgcggtccagcgccagcacacaggcg
ctctccagcagtgtcagctccagtaagctgtttcccagcagcacttctcctcatgagacg
tcgttcggagaggaggtggaggtgcacagtctgctggtggtggatcagcacacgtttgag
gtgctgcacgcgcatcagttcctgcagaatgagtatgcactgagtatggtgtcctgtaag
ctgggcagagatcctgcggtctacttcatcgtcggcacggccatggtgtatccggaggag
gcggagcctaaacagggccgcatcatcgtctttcactacacagacggcaaactgcagacg
gtggcagagaaggaagttaaaggtgcggtttactccatggtggagtttagtggtaaactg
ctggccagcatcaacagcaccgtgcgtctgtacgagtggacggcagagaaggagctgagg
accgagtgcaatcactataataacatcatggccctgtatctgaagactaaaggagacttc
atcctggtgggagacctgatgcgctccgtgctgctgctggcctacaaacagatggagggc
agcttcgaggagattgctcgtgacttcaatcctaactggatgagtgctgttgaaatcctg
gatgatgacaacttcctcggagcggagaacgctttcaatctgttcgtctgccagaaggac
agcgcggcgacgacagacgaggagcgacagcacctgcaggaggtgggtctgtttcacctg
ggagagttcgtcaatgtgttctcacacggttctctggtgctgcagaatctgggcgagagc
tcgactcccacacagggctcggtgctgttcggcacggtcaacggcatgatcggtttggtg
acgtcgctgtcggagagctggtacagtttactgctggatctacagatccgactcaacaaa
gtcatcaagagcgtcggcaagatcgagcacagcttctggaggtcgttccacaccgagcgt
aagactgagcaggccacgggcttcatcgacggagatctgatcgagagcttcctggatctg
ggtcgtgtgaagatgcaggaggtggtcagcacgctgcagatggatgacggcagcgggatg
aagcgcgaggctacggtggacgaagtgattaaaatcgtggaggagctgacacggatccac
taa
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