Carassius gibelio (silver crucian carp): 127934599
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Entry
127934599 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127934599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127934599
03036 Chromosome and associated proteins [BR:
cgib03036
]
127934599
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127934599
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127934599
mRNA degradation factors
5'-3' decay
Decapping complex
127934599
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127934599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA
SNF2-rel_dom
AAA_22
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
127934599
NCBI-ProteinID:
XP_052388045
LinkDB
All DBs
Position
A18:complement(21983656..21995201)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGSQTTQPAQVKPSSTVNNGNSQPAPT
ANTIIKPGDDWKKNLKLPPKDLRMRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALGIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVQMMEEILSFLPKQRQILLYSATFPLSVQKFMNTHLQKPYEINLM
DELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEEV
KL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagcccgaatggaaaatccagtgattctgggactgtcgaatcaaaatggccaa
atgcgaggctctgtgaagccggcaggtggtcctggtggaggggggtcccaaacaacacag
ccagcccaggtcaaaccctccagcaccgtcaacaacggcaactcccagcctgcacccaca
gccaacaccatcatcaagcctggggatgactggaagaaaaatctaaagcttcctcccaag
gatttgcgcatgagaacttcagatgtgacggcaaccaagggaaatgagtttgaggattat
tgcctgaaacgggagctgcttatgggcatctttgaaatgggctgggagaaaccgtcaccc
atacaggaggagagcattcccattgcgttgtctggcagagacattctggccagagccaag
aacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcatagacctgaag
aaagactgcatacaagcattgggtattgtgcccactagagaactggctctacaggtgagc
cagatatgtatccaggtcagcaaacacatgggcggggtcaaggtcatggcaacaacaggc
ggaaccaacctccgtgatgacatcatgagactcgatgaaacagtgcatgttgtcatcgcc
actccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaagttcag
atgatcgtgttggatgaggcagataagctcctgtcacaggactttgtacagatgatggag
gagattttgagctttttgcccaaacaaaggcaaattttgctgtattctgctaccttccca
ctgagtgtgcagaagttcatgaacacccatctgcagaagccctatgagataaacctgatg
gatgagctgaccctgaagggggttactcagtattacgcctatgtaacagaaaggcagaaa
gtccattgccttaatactctcttctccaggctccagatcaatcagtctataatcttctgc
aattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatactcctgt
ttctacattcacgccaagatgagacaggaacacagaaaccgtgtgttccatgatttcaga
aatggcttatgtcgaaatcttgtctgcactgatctcttcacaagaggaattgatatacaa
gctgtgaatgtggtgatcaactttgattttcccaaacttggggagacgtacctccatcgc
attggtagatctggccgatttggacacttgggcctcgccattaacttgatcacttacgat
gatcgctttaacctgaaaggtattgaagaacagctgggtaccgaaattaaacccattccc
agcagcattgataagagtctatatgtggccgagtaccacagtgagagcggagaggaggtt
aaactgtga
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