Carassius gibelio (silver crucian carp): 127934642
Help
Entry
127934642 CDS
T08819
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgib03009
]
127934642
03012 Translation factors [BR:
cgib03012
]
127934642
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127934642
5.6.2.5 RNA 5'-3' helicase
127934642
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
Other ribosome biogenesis factors
127934642
Translation factors [BR:
cgib03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127934642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
Viral_helicase1
zf-AN1
ResIII
DEAD
Helicase_RecD
UvrD-helicase
nSTAND3
SLFN-g3_helicase
Flavi_DEAD
AAA_16
PhoH
AAA_22
T2SSE
SRP54
Herpes_ori_bp
IstB_IS21
NPHP3_N
Zot
AAA_5
AAA_31
MAP3K_TRAF_bd
Glyco_transf_21
AAA
UvrD_C_2
ATPase
AAA_7
AAA_25
RL
AAA_33
ABC_tran
Motif
Other DBs
NCBI-GeneID:
127934642
NCBI-ProteinID:
XP_052388116
LinkDB
All DBs
Position
A18:complement(10078860..10089915)
Genome browser
AA seq
996 aa
AA seq
DB search
MEVENFVSKTLELLQEEREAELEETRAWQENLSLKNLQHKGVYLLKLQIASQHTGMYGRL
LVVFEPRKSIGPSILPSNTFGPGDIIGLYQSEGQDQPSQLGSGVVTRVAQASLTVAFDDT
QDGMNLDRDGLYNLMKLANDVTYRRLSSALKSLNGYSSGPASHLISVLFGYSEPGILSHQ
HALEFSNTGLDNSQKEAVCFAISQKDVAIIHGPPGTGKTTTVVEVILQAIKQEQKVLCCA
PSNVAVDNLVERLAKSKVKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIISDIRKDMDK
AFNEMKKARDKGQRSNLRQEIRELRRELRTREGMAITQILKRADVILATNTGASDDGPLK
HLPADHFDLVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQSAASKGLSVSL
MERLIKKYGDSVVRMLTTQYRMNSAIMQWASEQMYEGKLIAHPSVEKHLLRDLAGVADVE
ETRIPLLLIDTAGCGLNEMEDTDEQSKGNQGEVDIVALHIKALTESGVHVKDIAIIAPYN
LQVDLLRQKLSHKYAELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRQLVVVCDSQTVRKHDFLKSLVDYMSEHGEVHTAFEYLEDCVAQNYTRDEKDKQTNS
KDAASAKQKPKNQGKKTEQEPKKSANNKSRGVNQSSVQPEQHKNTNSQHPKAKDADRRKE
IKEQLLNFLKDSSKTELQFPSTLNSHERLLVHELSEEMGLRHESQGEGKNRHITVSRPPS
GLEKSVEPEQPDVTACTAAKLQQELQEGPSQPAVDLKSLHLERMRREQEKREEKEQQKQQ
SSRREPDANTSKSQSVKKPKGTSKGNTKIKAGVTDIAAAAMPDDDFDALINAVVKADSVC
AFVKCKASVLTLGQLCLYCNRQYCLSHHIPEVHGCGDKAKAQARMRISKEGVLYAGSGKK
DKSVDPNKKAYLQRKLDSKLKDMASQRKTKAKDAEN
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaaaacttcgtttccaagacgcttgagcttctgcaagaagagagagaagct
gaattagaagaaacacgagcatggcaggagaatttatctctcaagaatttacagcacaaa
ggagtgtacctgctgaaacttcagatcgcaagccagcatactggcatgtatggcagactt
ctggtagtttttgaacccaggaagagtataggaccctcaattctgcccagcaacaccttc
ggacctggtgatattataggtttgtatcagtcagaaggtcaggatcagccatctcagctg
ggttcaggtgtggtgacacgtgttgctcaagcttcactgacggtggcttttgatgacacg
caagatggtatgaacttggacagagatggactttacaatctaatgaagctggcaaatgat
gtgacctacaggagactgtcaagtgccttaaagtctttaaatggatacagcagtggtcct
gcgtctcacctgatcagtgtcctctttggttactcagaaccagggatactatcacatcag
catgcactggagtttagcaacactgggttagataattctcagaaagaggctgtgtgcttt
gcaatatctcaaaaagatgttgcaatcatacatggaccaccaggaactggcaaaaccact
acagtggtggaagtaatcctgcaggcaataaaacaggaacaaaaggtcctttgctgtgct
ccttccaatgtggctgtggataacttggtggagcgcctggcaaagagcaaagtcaaggtt
ttaagactgggacacccagcccgcctgcttgagtcgattcagaagcactcgctggatgcg
gtccttgcacacagtgacaacaccaacatcatttctgatatccgcaaggacatggacaaa
gcttttaatgaaatgaagaaggctcgagacaaaggccaacggagcaatctgagacaggaa
atcagggaactgcggcgagagctgaggaccagggagggaatggctatcactcagatcctg
aaaagggccgatgttattctagcaactaacactggagcctctgatgacggacctctcaag
catcttcctgctgatcattttgacctggtggtgatagatgagtgtgcccaggctctagag
agcagctgttggatcgctctgctcaaagcacgcaagtgcatactggctggggattacaaa
cagctgccaccaaccatcaaatcacagagtgctgcatctaaaggcctgtctgtcagctta
atggagaggctgataaagaagtatggagactcagtggttcgaatgttgaccactcagtac
cgtatgaacagtgccatcatgcagtgggcttcagagcagatgtatgagggcaaactgatt
gcacacccttcagtggagaaacacttgcttagagacctggctggtgttgctgatgttgag
gaaaccagaattccccttctgctcattgacactgcaggctgtggcctgaatgagatggag
gatacagatgagcagtccaaaggaaatcaaggagaggtagacattgtggctcttcatata
aaggcacttaccgagtctggagttcatgtcaaagacattgcgattatagcaccgtataat
ctccaggtggatcttttgagacagaaactgtcccataaatatgcagagctggagatcaag
tccgttgatggcttccagggcagagaaaaggaggcagtggtgttgtcattggtcagatcc
aacaggaaaggtgaggttggatttctcgctgaagacagaaggatcaatgtggctgtgact
cgtgccagacgccagcttgtggtagtgtgtgattctcagactgttcgaaaacatgacttc
ctcaaatccctagtggactatatgtctgaacatggagaggttcatactgcctttgagtac
ctggaagactgtgtggcacagaattacacccgtgatgaaaaggacaaacaaaccaacagc
aaagatgctgcatctgcgaaacagaagcccaagaaccaaggcaagaaaacagaacaagaa
ccgaagaaaagtgcgaacaacaaaagtagaggagtgaatcagtccagtgttcaacctgag
caacataaaaacaccaattcccagcatccgaaagccaaagatgctgatcggagaaaagag
ataaaggagcaacttctgaactttctgaaagactcaagcaagacagagctacagtttcct
tccacgctaaactctcatgagcgtctgctagtccacgagctctctgaagaaatgggactg
aggcatgaaagccagggagaagggaaaaaccgtcacatcacggtgtcccgacctccatca
ggactagaaaagtcagtggagcccgaacaaccagacgtgactgcatgtacagcagccaag
ctacaacaagagttgcaggaaggaccctcacagccagctgttgatcttaagagcctacat
ttggagcgaatgcgccgggagcaggagaaacgagaggagaaagagcagcaaaaacaacag
agttcgagacgggaaccggatgctaatacgagtaaaagccagtctgttaagaaacccaaa
ggaacttccaaaggaaacactaagataaaagcaggagtcaccgatatagctgcagctgcc
atgccagatgatgattttgatgctctcatcaatgctgtggttaaagccgacagcgtctgc
gctttcgtgaagtgcaaagccagtgtcctgacactcgggcagctctgcctctactgtaac
agacaatactgtctgagtcaccatatacctgaggtgcacggatgtggagacaaagcaaaa
gcccaagctagaatgaggataagtaaagaaggggtgctttacgcaggaagtggcaagaag
gacaaatctgtggatccaaataaaaaagcatatctgcagagaaaactagactctaaactc
aaagatatggcatctcaaagaaaaactaaagccaaagacgcagagaactga
DBGET
integrated database retrieval system
