KEGG   Carassius gibelio (silver crucian carp): 127935505
Entry
127935505         CDS       T08819                                 
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cgib  Carassius gibelio (silver crucian carp)
Pathway
cgib03082  ATP-dependent chromatin remodeling
cgib03083  Polycomb repressive complex
cgib04110  Cell cycle
cgib04330  Notch signaling pathway
cgib04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cgib00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    127935505
   03083 Polycomb repressive complex
    127935505
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    127935505
   04350 TGF-beta signaling pathway
    127935505
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    127935505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cgib03036]
    127935505
Enzymes [BR:cgib01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     127935505
Chromosome and associated proteins [BR:cgib03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     127935505
   HDAC complexes
    Sin3A-HDAC complex
     127935505
    BRAF-HDAC complex
     127935505
    REST complex
     127935505
    SHIP complex
     127935505
    MiDAC complex
     127935505
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     127935505
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    127935505
  Chromatin remodeling factors
   NuRD complex
    127935505
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 127935505
NCBI-ProteinID: XP_052389386
LinkDB
Position
A19:11151440..11156742
AA seq 485 aa
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLFSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDPDKRISIRAHDKRIACDEEF
SDSEDEGQGGRRNAASYKKPKRVKTEEEKDGEEKKGEPTADVKEEEKASEEKMDTKGPKE
ELKPV
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgagttctcaaggaacaaagaagaaagtttgctattattatgacggggatgtt
ggcaattactactatggccagggtcatcccatgaagccccacagaatccgcatgacccac
aacctcctgctcaactatgggctgtataggaaaatggaaatttaccggcctcataaagcc
aatgctgaagaaatgaccaagtatcacagtgacgattacatcaagttcctcttttccatc
cgcccagacaacatgtctgagtacagcaagcagatgcagagatttaacgtaggggaggac
tgtcctgtctttgacggcttatttgagttctgtcagctttcaactggtggatctgttgct
ggggctgtgaaactcaacaaacagcagacagacattgccattaactgggcaggaggcctt
catcatgccaagaaatctgaggcgtctggtttctgctacgtcaatgacatcgttctggcc
attctggagctactcaagtaccatcaaagagtgctttacatcgacattgacattcatcac
ggcgatggagtggaggaagctttctacacaacagaccgtgtcatgaccgtgtccttccac
aagtacggagagtatttccctggcactggagacctccgagatatcggtgcagggaaggga
aagtactatgccgtgaactacccgctcagagatggtattgatgatgagtcatatgaagcc
atattcaaacctatcatggccaaagtgatggagatgtaccagcccagtgctgtggtgctc
cagtgtggtgctgactctctgtctggagatcggttgggctgctttaacctcaccatcaaa
ggtcatgctaagtgtgtggagtacataaagagctttaacctgcccctgctcatgctggga
ggtggaggctacaccatcaggaacgtggcccgctgctggacctatgagacggctgtagcg
ctggacagcaccattcccaatgagctcccgtacaatgactactttgagtactttggacct
gatttcaagcttcacatcagcccctcaaacatgaccaatcagaatacaaatgactatctg
gaaaagatcaagcagcgtctgtttgagaatctgcggatgttgcctcatgccccaggggtt
cagatgcaggcgatcccagaggatgctgttcaggaagacagcggagatgaggaggaagac
cctgacaaacgcatctccatccgtgctcatgacaagcggatagcctgtgacgaggagttc
tcggactctgaggacgaaggacagggcggccggagaaatgcagccagttacaaaaagcct
aagcgagtgaagactgaagaagagaaggatggagaagagaagaaaggtgagccaacagca
gatgttaaagaagaggagaaagcttcagaggaaaaaatggacacaaaggggccaaaagaa
gaattaaaaccagtctga

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