Carassius gibelio (silver crucian carp): 127935644
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Entry
127935644 CDS
T08819
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127935644
09122 Translation
03013 Nucleocytoplasmic transport
127935644
03015 mRNA surveillance pathway
127935644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127935644
03041 Spliceosome [BR:
cgib03041
]
127935644
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127935644
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127935644
Spliceosome [BR:
cgib03041
]
Complex C
Other components
EJC/TREX
127935644
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127935644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
127935644
NCBI-ProteinID:
XP_052389684
LinkDB
All DBs
Position
A19:10182668..10198073
Genome browser
AA seq
435 aa
AA seq
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MTENDVENELLDYEEDEVDAGGVGDTGLGHNDGIISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgatgttgagaatgagctgttggactatgaggaggatgaggttgatgca
ggtggagtcggggacacaggactcggacacaacgatggcattatatccatcaggaaagaa
ggggtcaaagggtcatatgtgtccatccactcctcaggattcagggattttcttctcaaa
ccagagctgctgagagctatagtggactgtggctttgaacatccatcggaggttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaagtctggaatg
gggaagacggctgtctttgtgttggctacccttcagcagctggagccagtgacagggcag
gtgtcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtat
gagcgcttctccaaatacatgcccagtgtcaaggtggcagtgttcttcggtggtttatct
ataaagaaggatgaggaggttctgaagaaagagagtcctcatgtggtggtgggaactcct
ggacgcattctagctctgtctcgcaacaagagtctcaacctgcgccacatcaagcacttc
atcctggacgaatgtgacaagatgctggagcagcttgacatgcggcgtgatgtccaggag
atctttcgtatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagtaaa
gagatccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgat
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaaccaggtggtgatcttc
gtgaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttcccc
gccattgccattcatagagcaatgcctcaagacgagagattagctcgatatcagcaattc
aaggatttccagagacggatcctggtggccacaaacctgtttggccgaggtatggacatc
gaaagagtcaacatcgcctttaactacgacatgcctgaagattcagacacatacctgcac
agggttgcaagggccggcaggtttggaacgaaaggtctggccatcacctttgtgtcagat
gagactgacgctcgcactttgaacgatgtccaggacaggtttgaagtgaacatcagtgaa
cttccagaggagattgacatctcatcatacattgagcaaacacgatga
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