Carassius gibelio (silver crucian carp): 127935878
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Entry
127935878 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127935878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127935878
03036 Chromosome and associated proteins [BR:
cgib03036
]
127935878
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127935878
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127935878
mRNA degradation factors
5'-3' decay
Decapping complex
127935878
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127935878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
127935878
NCBI-ProteinID:
XP_052390042
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All DBs
Position
A19:complement(21368179..21376059)
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AA seq
480 aa
AA seq
DB search
MSTKMENTGPAFIGLNTHNRHLIGQPKGPSQSGKEPMGTPKPAIASQEGPGIRFGDDWKK
SLLLPAKDNRFKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDIKKDHIQAIVIVPTRELALQVSQISIQISKHLGGV
KVMATTGGTNLRDDIMRLDEEVHVVIATPGRILDLIKKGIAKVNKVQMMVMDEADKLLSQ
DFVVIIEDIISFLSKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLKGITQYYA
YVTEKQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGCSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITAEDRFNLKTIEDQLMTEITPIPGSIDKSLYVAEFHSVNPDCEAETSHPGGGSEAH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaaagatggagaatactgggcctgctttcattgggttaaacacacacaatagg
catcttataggacagcctaaaggcccctctcagtctggaaaggagcccatggggacccca
aaaccagccattgcatctcaggaaggacctggaatcaggtttggtgatgactggaaaaaa
agcctactgctcccggctaaggacaatagattcaaaacttctgatgtgactgcaaccaaa
ggaaatgagtttgaggactactgtctaaagagagagctgctgatgggcatttttgagatg
ggatgggaaaagccctcccccattcaggaagagagtattcctattgccctttctggccgc
gatatactggctcgtgccaaaaacgggactggaaagagtggtgcataccttatccccctt
ctggagcgaattgacataaaaaaggatcatatccaggccattgtgatagttcccactcgt
gaactggctctgcaggtcagtcagatcagtattcagatcagcaagcacctgggtggtgtc
aaggtcatggcaaccacaggagggaccaacctacgagatgatatcatgcgcctggatgag
gaggttcatgtggttatagcaacacctggcagaatcttggacttgataaaaaagggcata
gccaaagtgaataaagttcagatgatggtcatggatgaggctgataagctactctctcag
gactttgtggttattattgaggacatcattagtttcctttcaaagaacagacagattctg
ctctattcagccacattccccatcagtgtacagaagttcatggcaaagcacctgcagaag
ccctatgagattaatctgatggaggaactgaccctgaaaggcatcacgcagtactatgct
tacgtcacagaaaaacagaaagtccactgcctcaacacattgttctccaggttgcagata
aatcagtccatcatcttttgtaactctactcagcgagtggagctcttggccaagaagatc
acgcagctgggctgctcctgcttttacattcatgctaagatgatgcaggaatacagaaac
cgggttttccacgacttcagaaatgggctctgcagaaaccttgtttgcacagatttattc
actagaggcatcgacatccaggcagtaaatgtggtcatcaactttgacttccccaagaat
gcagaaacatatctgcatcgcatcggacgctcaggaaggtttggacatctgggtttggca
atcaatctcattaccgctgaggatcgttttaacctgaagaccattgaggaccagctgatg
acagagataacgcccattcccgggagcatcgataagagcctgtatgtggcagagtttcac
tcggtgaaccctgactgtgaggcagagacatctcaccctggaggaggctctgaagcacat
tag
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