Carassius gibelio (silver crucian carp): 127938263
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Entry
127938263 CDS
T08819
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03013
Nucleocytoplasmic transport
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127938263
03015 mRNA surveillance pathway
127938263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127938263
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127938263
5.6.2.5 RNA 5'-3' helicase
127938263
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127938263
mRNA cycle factors
Common to processing body (P body) and stress granule
127938263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
127938263
NCBI-ProteinID:
XP_052390683
LinkDB
All DBs
Position
A2:29792646..29812394
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGILPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLMMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagtttaccgactttacgctg
cccagccagacccaaactcaaggccagacccagagccaactcgacaaccaggtgaacggg
cctgatggtattctgcccaacggagaggacgcagtggtaaagaccagccaacttctggcc
gagctgaactttgaggaggatgaggaagatacttactacactaaagacttgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcgggaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgactctgcataaggacgggccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgcttggcttcatcccggctaaagcc
gactctgtcgtggtgctcctctgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgactctggaagatttggag
aaacctggagtggatgaggaaccccagcacgttcttctacgctacgaagatgcctatcag
taccagaacatctttgggccactggtcaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacctggctccgctgtggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccacataacttccaggtggactttgtctggaagtcaacatctttt
gaccgaatgcagagcgccttgaagacgtttgcggtggacgagacctcggtgtccggctac
atctaccataaactgctgggtcacgaggtggaggacgttatcattaaatgccagctgccc
aaacgcttcactgcgcagggcttgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgcttcagcgacccctgagtctgatccaggggcctccaggaaccggaaagactgtc
acttctgccaccatcgtctaccatctggccagacagggcaacggtccggttctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacgggactgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattccccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgctaccgagctctcaaacga
accgctgagagagagttgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgtctggctaagatgcagtttcgctccatcctcatcgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgtaagaaggcagctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcaggcccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgccttcccttcaaacatcttctacgagggctct
ctgcagaacggagtcaccgctgctgatcgcatcaagaaaggctttgactttcagtggcct
cagcccgataagcccatgtttttctacgtgacccagggccaagaggagatcgcgagctct
ggcacctcttatctcaacaggactgaggcgtctaatgtggagaagatcacaacccgtctg
ctgaaggccggagccaaacctgaccagatcggcatcattacaccctacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctctctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaatgagcaccagggcatcggcttcctgaacgacccacggcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaaccctaaggctctgtcc
aagcagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaa
ggaccgctcaacaacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtactgccatgtatgacgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactgggcgtccttctaatatgtacttc
cagactcatgaccaggtcggtatgatcgggacggggccgaaccccatgggctccatgaac
atccccatcccgttcaatctgatgatgcctcccatgcctccgcctgggtacctgggacag
gtgaacggacccgcagccggtcgtggtgctcctaaaggaaagaccgggggtcgtggaggt
cgtcagaggaaccgtggcaccggtaatcacggcagcggtcaggccaacatgccgaacagc
caggccagtcaggatctagtgtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcccgagctctct
caggatagctacctgggtgatgagttcaaatcccagatggacgtggcgctttcccaggat
tccacctaccaaggagaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
