Carassius gibelio (silver crucian carp): 127938303
Help
Entry
127938303 CDS
T08819
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04137
Mitophagy - animal
cgib04140
Autophagy - animal
cgib04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127938303
04137 Mitophagy - animal
127938303
04148 Efferocytosis
127938303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127938303
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127938303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Cas_Csn2
Motif
Other DBs
NCBI-GeneID:
127938303
NCBI-ProteinID:
XP_052390778
LinkDB
All DBs
Position
A20:complement(13493321..13507666)
Genome browser
AA seq
781 aa
AA seq
DB search
MEISVGITEAGKCCLVFRVSSERRKEKSRDAARSRRGKESEVFYELAHQLPLPHNVTSHL
DKASIMRLTISYLRMRKLLSSDEEEKENEEESQLNSFYLKALEGFLMVLSEDGDMVYLSE
NVTKSMGLTQFDLTGHSIFEFSHPCDHEELREMLVHKTGSKKTKEQNTERSFFLRMKCTL
TSRGRTVNIKSATWKVLHCAGHVRVQERSEDSGDSGFKEPPLTYLVLICEPIPHPSNIEV
PLDSKTFLSRHTLDMKFSYCDERITELMGYEPDDLLNRSVYEYYHALDSDHLTKTHHNLF
AKGQATTGQYRMLAKKGGFVWVETQATVIYNPKNSQPQCIVCVNFVLSGIVEGDVVLSLQ
QTVTEPEAEEKENKEIEDEASEVDILKLFKPENLKCPIKSSELYEKLKGKPEALTVLAPA
AGDTIISLDFNNSDSDMQLLKEVPLYNDVMLPSSSEKLPISLSPLTPLDSTPVLTKLETG
AEDFPFCSASDRGPDSTNSSSTSGLGSSRPNSPMEYCFQVDSDISSEFKLDLVEKLFAID
TEAKTPFSSQAVEDLDLEMLAPYIPMDDDFQLHIPSKLDPLPSGPHSVSAMSSLFQPLPS
PTSPASSSSSVVKQEPSSQAPSPLHLLQEVCSAPVSPFSGSRDVSPARSPTPQNSNQLNN
RELSPKMLAIQNAQRKRKLEEVTSLCEAVGLGALLQSVDSVVEPGKRAKVLEVKGSSMLG
GNKTILILPSDVASRLLCSSLESSHGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQV
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggaaataagtgttgggattacagaggctggaaaatgttgcttggtttttcgggtgagc
tcggagcgcaggaaggagaagtccagggatgcagcacgatctcgcaggggaaaggagtct
gaggtgttctatgaattagcacaccagctccctctgccacacaatgtcacctcccacctg
gacaaagcctccatcatgaggctgaccatcagctacctgcgcatgaggaagctgctgagc
tctgatgaagaagagaaggagaatgaggaggagagtcagctgaacagcttttatctgaag
gccttggagggtttcctcatggtcctgtctgaagatggagacatggtttatctctctgag
aatgtcaccaaaagcatgggcctcacacagtttgatctgactggtcacagcatctttgaa
ttttcacacccatgtgaccatgaggagctgcgagagatgctggtccataagaccggatcc
aaaaagaccaaggaacaaaatactgagcgcagcttcttcctgcgtatgaagtgcacgctc
actagcagagggcggactgtcaatatcaagtctgctacatggaaggttcttcactgcgct
ggtcacgtccgtgtgcaggagcgcagcgaggattcaggagactctggctttaaagagcct
cctctgacctaccttgtgctcatctgtgagcccattcctcatccctcgaacattgaggtg
cctctggacagcaagacctttcttagccgccacactctggacatgaagttctcgtactgt
gatgaaaggatcacagagctgatgggatatgagccagatgatctgctgaacaggtctgtg
tacgaatactatcatgccctggattcagatcacctcaccaagacacatcacaacttgttc
gccaagggccaggccaccacaggccagtaccgcatgctggctaagaaaggtggttttgtg
tgggtggagactcaggccactgttatctacaaccccaagaattctcagccgcagtgcatt
gtgtgcgtcaacttcgttctcagtggcattgtggagggggatgttgtcctgtccttgcag
cagactgtgacagaacctgaggctgaggagaaagagaacaaggagatagaagatgaggcc
tctgaggtggacatactcaaactcttcaagccagaaaacctcaagtgtcccataaagagc
tctgaactttatgagaagctgaaagggaagcctgaagctcttactgtgttggcgcctgct
gcaggagacaccatcatctctctggacttcaacaactcagattctgacatgcagctgctg
aaggaggtgcccctctacaatgatgtcatgctgccctccagcagcgagaagctgcccatc
agtctgtctcctctgaccccccttgactccaccccagtcctgaccaaactagagaccgga
gcggaggacttccctttctgctctgcttctgatcgtggtccagactccacaaactcatct
tccacatctggactgggctcctcgaggcccaacagccccatggaatactgtttccaagta
gactcagacataagttctgaattcaaactggacctggttgagaaactgtttgctattgat
accgaggcaaagaccccttttagctcccaggccgtggaggatctcgacctagagatgctg
gctccatacatcccaatggatgatgacttccagctgcatatcccctctaaactggatccg
ctcccctctggccctcactctgtgtccgccatgagctccctgttccaacccttaccctcc
cctacatctccagcctcttcctccagcagcgtagtgaagcaggagccgtcatcccaggcc
ccttcacccctgcacctgctgcaggaggtgtgcagtgcccctgtgtcacccttcagcggc
agtcgcgatgtttcccctgctcggtctcccaccccacagaacagcaatcagctcaacaac
agagagctgtcaccaaagatgctagccatccagaatgctcaacgtaagaggaagttggag
gaagtgacatcactttgtgaggctgttggactgggtgctttgcttcagagtgtggacagt
gttgtcgaacctggaaagagggcaaaggttttagaggttaaaggatcgagtatgcttgga
ggaaataaaaccattctcatactgccctctgatgtggccagtcgcctgttgtgcagttct
ttagagagcagccatgggctgcctcagctaacacgttacgactgcgaagtcaacgctccc
gtgcaggaccgccatcatctcctgcagggagaggagctcctgcgtgctctggaccaagtc
aactga
DBGET
integrated database retrieval system
