Carassius gibelio (silver crucian carp): 127938600
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Entry
127938600 CDS
T08819
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib00100
Steroid biosynthesis
cgib01100
Metabolic pathways
Module
cgib_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
127938600
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cgib01006
]
127938600
Enzymes [BR:
cgib01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
127938600
Prenyltransferases [BR:
cgib01006
]
Terpene biosynthesis
Squalene/phytoene synthase
127938600
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
DUF5740
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
127938600
NCBI-ProteinID:
XP_052391273
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All DBs
Position
A20:complement(27628491..27639199)
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AA seq
440 aa
AA seq
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MAGVVGKSSVSFSVLKRSFSLRGSVLTGGCRLVTRPPPHPLRTHRHPASVCFSCQDSMSE
TLRSCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMRIPLEKKVPLLQ
DFHSFLYQPEWSFAESREKDRQVLEDFPTISMEFRNLGLEYQEVISDICHRMGAGMAEFL
QKKVSSMKEWDQYCHYVAGLVGIGLSRLFSASQLEDPEVGRDTELANSMGLFLQKTNIIR
DYLEDQQEGRAFWPQEAWSQFTARLEDLAHPQHLSSALSCLNLLVTDALHHVPDVIAYLS
RLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQAVTLMMQATNMSAVLSII
AQYTQEILQKVSVTDPSREKTLRILSLIREKSVSPAALSSRAHHISPVYVSAVMLLAALS
WQYLNASAGQPPGGADMQGH
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggctggagtcgtcggtaagagctccgtgtcgttctccgtgctcaagcgctcgttctcg
ctgcgcggctcggtgctcacgggcgggtgtcggctggtgacccgtcctcctcctcacccg
ctccggactcaccgacaccccgcatctgtgtgcttctcctgccaggactcaatgagcgag
accctgcggagctgctacgcgtatctgaaccagaccagccggagcttcgcggcggtgatc
caggccctggacggagagctacggcatgccgtgtgtattttctacctggttctgcgagct
ctggacacggtggaggacgacatgagaatcccgctggagaagaaggtcccgttactgcag
gacttccactcgttcctctatcagcccgaatggagcttcgccgaaagccgagagaaagat
cgacaggtgctggaggatttccccacgatttcgatggagttcaggaatttgggactggag
tatcaagaggtgatttcagacatctgtcaccggatgggtgcgggaatggccgaattcctg
cagaagaaggtgtcttccatgaaggaatgggaccagtactgtcattacgtggcgggtctg
gtggggatcggcctgtcccgtctgttctcggcgtcccagctggaagaccctgaggtgggc
cgggacacagagctggctaactccatgggtctgttcctccagaagaccaacatcatcagg
gactatctggaggaccaacaggagggaagggctttctggccgcaggaggcctggagtcag
ttcacggctcgtctggaggatttggctcatcctcagcacctgagctccgctctgtcctgc
ctcaacctgctggtgaccgatgccctccatcacgtaccagacgtcatcgcatacctgtcc
cgcctccgcaaccagagcgtcttcaacttctgtgccattcctcaggtgatggctatagcg
actctgtcggcgtgttacaacaatcctcaggtgtttcagggggtggtgaagattcggaag
ggtcaggctgtgaccctcatgatgcaggccacaaacatgagcgccgttctgagcatcatc
gcacaatacactcaagagatcctgcagaaggtttccgtcacagacccgtcccgggagaag
acgctgcgtatcctgagtctcatccgagagaagagtgtgtctccagccgcgctgtcgtcc
cgcgcgcaccacatctctccggtctacgtctcggccgtcatgctgttagcggcgctcagc
tggcagtatctgaacgcctcggccgggcagccaccagggggcgcagacatgcagggacac
tga
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