Carassius gibelio (silver crucian carp): 127938968
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Entry
127938968 CDS
T08819
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127938968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127938968
Spliceosome [BR:
cgib03041
]
Complex C
Other components
Step II factors
127938968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
127938968
NCBI-ProteinID:
XP_052391874
LinkDB
All DBs
Position
A20:27786272..27800569
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AA seq
601 aa
AA seq
DB search
MQFNLRTAFISEDPADERATTFKMAAVASSLVSYCSDSDSENESESGNGPQTVDPDAVSH
LQPLKPGTLTALAALNPAPEVAVKEDVETGVHLDPALKEVTYNPSYETMFAPEFGPSNPF
RSKQMSAPRNMLSGYAEPAHVNDFMFEQQRRTFSTFGYALDPSVDTSQVSSSSYIGAVEE
AEKNKGLMAFETGVKKSEKRKKVKGGDASDIESFLGPWAKYQDERDVAKPSEDEKKELDE
ILAKRQKRGKNEEEAPAEEKTILHVKDAYDYQGRSYLHVPQDVGINLRSADVPDKCYLPK
KQLHVWTGHTKGVSAIRLFPLSAHLLLSCSMDCKIKLWEVYNDRRCVRTFIGHSKAVRDV
CFNNTGTQFLSAGYDRYLKLWDSETGQCISRFTNRKVPYCVKFNPDEDKQQLFVAGMSDK
KIVQWDIRSGEVVQEYDRHLGAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAE
PSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSP
DMSYVVSGDADGKLNIWDWKTTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLW
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaatttacgaacagcattcatctctgaggaccccgctgacgaaagagccaca
acattcaagatggcggcggtcgcgagttccctcgtttcttactgcagcgactcagattcg
gaaaacgagtccgaatccggtaacggaccacagacggttgatccagacgcggtatcccat
cttcagccgttaaaacccggcactctaacggcgctagccgctctgaatcccgcgcctgaa
gtcgccgtgaaggaagatgttgagaccggggttcatctggatccagcgctcaaagaagtc
acttacaacccttcgtatgaaaccatgtttgctccagagtttggaccatcaaacccattc
cgatcgaagcagatgtccgctccgagaaacatgctgtccggttacgccgaacctgctcac
gtcaacgacttcatgtttgagcagcagaggagaacgttctccaccttcggatacgctctg
gacccgtctgtggacaccagtcaggtctcgtccagcagctacatcggagccgtggaggaa
gcagagaagaacaaagggctgatggcgtttgagacgggagtgaagaagtccgagaagagg
aagaaggtgaaaggaggagacgcatcagacatcgagagcttcctcggaccctgggccaaa
taccaggatgagagagacgtggccaaaccctccgaggatgagaagaaagagctggacgag
atcctagccaagagacagaagcgaggcaagaatgaagaagaggctccagcggaggagaag
accatactgcacgtcaaagatgcgtacgattaccagggccgctcttacctgcacgttcct
caggacgtgggcatcaacctgcgctcagcagacgtcccggacaaatgctaccttcccaag
aaacagctgcacgtctggaccggacacaccaagggggtcagcgccatccgtctgttcccg
ctgtctgctcatctcctgctctcctgctccatggactgtaagatcaagctgtgggaggtt
tataatgacagaagatgtgtgcgcacgttcatcggtcacagtaaagccgtgcgtgacgtg
tgcttcaacaacactggcacacagttcctgagcgccggctacgacagatatctgaagctc
tgggactcggagacgggtcagtgcatctcacgcttcaccaacaggaaggttccctactgc
gtcaagttcaacccggacgaggacaaacaacagctgtttgtagccgggatgtccgacaag
aagatcgtccagtgggacatccgctccggtgaggtggttcaggagtacgacagacacctc
ggtgcggtcaacaccatcactttcgtggacgagaaccggcgcttcgtcagcacctcggac
gacaagagtctgcgcgtctgggagtgggatattcctgtggacttcaagtacatcgctgag
cccagtatgcactcgatgcctgcggtcacactgtcgcccaacgggaagtggctggcgtgt
cagtccatggacaatcagatcctgatcttcggagcgcagaacagattccggctcaacaag
aagaagatcttcaagggtcacatggtggcgggatacgcctgtcaggtggacttctctccg
gacatgagttacgtggtttccggcgacgctgacgggaagctgaatatctgggactggaag
acgacgaagctgtatcaccggatcaaggctcatgataaggtgtgcatcagtgcgctctgg
catcctcacgagacgtccaaggtgatcacctgcggctgggacggacagatcaagctctgg
gactga
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integrated database retrieval system
