| Entry |
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| Name |
(RefSeq) probable helicase with zinc finger domain
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| KO |
| K25168 | helicase with zinc finger domain [EC:5.6.2.-] |
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| Organism |
cgib Carassius gibelio (silver crucian carp)
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| Brite |
KEGG Orthology (KO) [BR:cgib00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cgib03019]
127940478
Messenger RNA biogenesis [BR:cgib03019]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
127940478
3'-5' decay
Other 3'-5' decay factors
127940478
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
A3:7511445..7566486
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| AA seq |
1881 aa
MEDRRPQKSCDEAIGSLVRQEYEAAVAHSTEALLAMGPPTPGTALLRKRALLYRIAARLQ
LKDYDQADEDCKHVFAEELGKGEGSFRAGLQSLLLDGSLQEVCSVLSKALYGEPLNGIMT
KDMTRLKMLLSEIEAVGSKMASEFSEENEEDVQEGWQFRPPPRGVTSSEEYTLCKRYLEQ
GLCRYGAQCTSAHSQEELTEWQQRYASRLIRLKQQQEGKHFTENYMEALIEKWINSLTPE
RVMNDCVDGVTVEHSSDLSITVNTKKSSHSWTFTLYCKPVRTLHRIALLYDANRPHFSIT
AVSAGDVSTQVPQEVCEGGCQEWSAPGLVQNGMDHCVYTVEVSFSTEIFGTFRQTAVFDF
GSEPVLMQRVMVDAASIEDLEHLMQARQQLLMTAKRWDSSCKTIVEFVPNENMDLERSLL
TRYQIPLSADQLFTQSVLDKTLTRDNYQPRLHDLLYIEEIAQYKEVSKFNIKVNLQLVTS
FMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPVCKERMGQNQP
AGAKERVYEALIEEKTKDYIFLRVCKECCDELGLVADQELQVELQFQLNRLPLCEMHYAL
DRVRDNGILFPDVSLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAITTPLSISLPPVLII
GPYGTGKTFTLAQAVKHILKQPETRVLICTHSNSAADLYIKDYFHPYVEAGNPHARPLRV
YFRNRWVKTVHPLVQQYCLISGAYFTFQMPTRQDVERHRVVVVTLSTSQYLCQLDLEPGI
FTHILLDEAAQAMECETIMPLALANKSTRIVLAGDHMQLSPFVYSEFARERNLHMSLLDR
LYEHYPSEYPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPPHKDFYPLTFFTARG
EDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVVSPYADQVFRIRAEL
RKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGF
LSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWETFISICHENQSLHGITFEQIKI
QLEALELKKTYVLNPLAPEFIPRALRSQHPQGPGKHQHSPPKAKGQLANHTEPFPPEGFV
QPNAAVLMGNPIQAFTPPGAGAPASGKSPSPVQRIDPGANILYVPAVYGGNMVVPMPLPL
PWSGYQSRFAMDPRIISHQAAMAAYNLNLRPAASRTSPVLYGFNHPSPLGLNQQPSSEKE
LLQEPSGNGKIDINGKTEHCRLLTPERKAPELKEKQGDSESVQNKSPEPQSNMGFPGSRL
IRKDPQAQRALNFHLGPPHPGFPPHHGNSQFPQQYGLSRPPLRMQAPIHPQASFPPSFFS
GPPMAHRGLQSPVLEGGEGSMGAGPGGVAEDLKGVVRGLPLQMHQQPLRINSFGEENLDS
LLGDTLDGQASSGLDALGQQQQQQLAARVGQWGEQSPFLQAGMAPFPLAHLGQPGLRLPQ
QLLRGGWGLGPAAEEEPRPAMHRYPGLLREMLPQDQYEQREPADMPPPQSRLLQYRQVQL
RNPGDLPSPSSSSSNHTSGPNPFTVPGPPSFPDTGRELPMGGQPFQQHQAFHQASYSLPP
EHTAGPLPVKYLLQEAHWPHPGLPQSHVLGHGVPFGMQTMAHRQEQGPLTQLQHQQQKQQ
LQAPQSSLHSVEEYEPRGPGRPLYQRRISPSSPQPYPDSLDPQDHPTPSYRYPSADLWLG
SSGPGPGPNPAPLQNIPCNGASHLVPHREVLVSKAMSVSEEQQSPHPASTASLQHHGQFP
PLMPSKQTPPDPGGGNTSPGGPQGPGNPKPPTMSYASALRAPPKPRPLPEQVKKNSDPIS
LLQELSIGSSNSSNGYYTYFK |
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| NT seq |
5646 nt +upstreamnt +downstreamnt
atggaggacagaaggccacagaagtcatgtgacgaggccattggatcattagtgaggcag
gagtatgaggcggcagtggctcacagcaccgaggccctgctggccatgggacccccgacc
cccggcacggccctcctccgaaagcgtgccctgctctaccgcatagcagcacgactccag
ctgaaggactatgatcaggctgatgaagactgcaagcatgtgtttgccgaggagctgggg
aagggagagggcagtttcagggcaggtcttcagagtctgctgctggatggaagcttacag
gaagtgtgcagtgttctctctaaagccctctatggagaaccactgaacgggatcatgact
aaagacatgacaagactgaagatgctcctctcagaaatagaggctgtggggagtaagatg
gcatcagagttttctgaagagaacgaggaggatgttcaggaaggctggcagtttcgtcct
cctcctcgaggggtcactagtagtgaggagtacacgttgtgtaaaaggtatttagagcag
ggtctgtgtcggtacggagctcagtgcacctcggctcactctcaggaggagctgaccgaa
tggcagcagcgctacgcctcgcgactcatccgcctcaaacagcagcaggagggcaagcac
ttcacggagaactacatggaggcgctcatcgagaagtggatcaactccctcacgccggag
agagtgatgaatgactgtgtggatggagttacagtggagcacagctcagatctctcgatt
actgtcaacaccaagaaatcatctcactcctggacgttcacgctctactgcaagccggtc
cgtacgctacaccgcatcgcactgctttacgatgccaaccggccacatttctccatcacg
gcggtctcggccggggacgtgtctacccaggtgccccaggaggtgtgtgagggcggctgt
caggagtggagcgccccgggcctggtgcagaacggcatggaccactgcgtttacaccgtg
gaggtctccttcagcacggagatcttcgggaccttccggcagaccgcggtctttgatttc
ggctccgagcccgtgctcatgcagcgagtgatggtggacgccgcctccattgaagacctg
gagcacttgatgcaggcgcgacagcagctcctgatgacggctaagcgctgggactcgtca
tgtaaaaccatcgtggagtttgtcccgaatgaaaacatggatctagagcgcagtctactg
acccgctatcagatccccctctctgccgaccagctcttcacccagtctgtgctggacaaa
accctcaccagagacaactaccagccccgcctgcacgacctgctctacatcgaggagatc
gctcagtacaaagaagtcagcaagttcaacatcaaggttaacctgcagctggtgacgagc
ttcatgttgaccggcatttctggtggtgccaagtacgctcagaacggacagctgttcgca
cgcttcaagctgacagagacgctgtctgaagatacgctggctgggcggctggtcatgaca
aaggtcaactctgtgctgctgctgcctgtctgtaaggagcggatgggtcagaatcagcca
gccggagccaaggaacgcgtgtatgaggccctgatcgaggaaaagaccaaagactacatc
tttctgcgggtctgtaaggagtgctgtgacgagctaggactggtggcggatcaggagctg
caggtggagctgcagtttcagctgaacaggcttcctctgtgtgagatgcactatgctctg
gatcgcgtccgtgataatgggatcctgtttccagatgtcagcctcactcccacaatcccc
tggagtcccaacaggcagtgggatgagcagctggatccccgtctgaacgccaagcagaag
gaggctattctggccatcaccacccccctctccatcagcctcccgccggtgctcatcatc
ggaccctacggcacaggcaagaccttcacgctggcccaggctgtcaaacacatcctcaag
cagcccgagacacgggttctgatctgtacacattcaaacagtgcagcagatctgtacatt
aaagattactttcatccatacgtggaggctggcaatccacacgcacgccctctcagggtt
tatttcaggaaccgctgggtgaagacggtgcaccctctggtgcagcagtactgcctgatc
tccggagcgtacttcaccttccagatgcccacgcgacaggatgtagagcgccaccgtgtg
gtcgtggtcacgctcagcacgtcccagtacctctgccagctcgacctggagccagggatc
ttcacacacatcctgttggatgaggcagcccaggctatggagtgcgagaccatcatgccg
ctggcgttggccaataagagcacccggattgtcctggcaggagaccatatgcagctcagt
ccgtttgtgtacagtgagtttgcgcgggagaggaatctgcacatgtctctgctggaccgg
ctgtacgagcactacccatccgagtacccctgcaggatcctgctgtgcgaaaactaccgc
tcccatgaggcaatcatcaactatacgtctgagctcttctacgagggcaaactgatggcc
agcgggaagcagccgccccataaggacttctaccctctgaccttcttcactgcccgcgga
gaagatgtgcaagagaagaacagcacggcttactacaacaacgccgaggtgtttgagata
gtggagcgggtggaggagatgaggaagaagtggcccgtggcctgggggaagctggacgag
gggagtatcggcgtggtctcgccctacgccgaccaggtcttccgaatcagagccgagctg
cgcaaaaagaggatgccagaggtcagcgtggagagagtgctgaatgtccagggtaagcag
ttccgcgtgctgttcttgagcaccgttcgcacccgtcacacctgcaaacacaagcagacg
gccatcaagaggaaagagcagctggtggaggactccaccgaagacctggactacggcttc
ctgtccaactacaagctgctgaacaccgccatcactcgagcgcagtccctggtggccgtg
gtgggagaccccatcgctctctgctcggtgggacgctgcagaaagttctgggagacattc
atctccatctgtcatgagaaccagagtctccacggcatcacctttgaacagattaaaatc
cagctggaggcgctggagctgaaaaagacctacgtactcaacccgctggccccagagttc
atccctcgtgccctgcgctcgcaacatccccagggtcccggcaagcaccagcactcccca
cccaaggcaaaaggacagctggccaatcacactgaacccttcccccctgaaggctttgtt
cagccaaatgctgctgtgttgatgggaaacccgattcaggcctttactccaccaggagca
ggagctccagcctccggcaaatcaccaagccctgttcaaagaatcgaccccggagccaac
atcctctatgtgcccgctgtctatgggggcaatatggtggtgcccatgcctcttccattg
ccatggtctggctaccagagccgttttgctatggatcctcgcatcataagtcatcaggcc
gccatggctgcgtacaacctcaacctgcggccggcagccagtcgcacctcacctgtgctg
tatggcttcaatcacccgtctcctctaggcctgaaccagcagccttcctctgagaaagaa
ctacttcaagagcccagtggaaatgggaaaatcgacattaatgggaaaacggagcattgt
aggctgctgacacctgagaggaaagctcctgagctgaaggaaaaacagggagactccgag
tcggtgcagaataagagtccagagccccagtccaacatgggcttccctggcagtcgcctc
atacgcaaagacccgcaggctcagagggccctcaacttccacctgggccccccgcatccc
ggtttcccccctcaccacgggaacagccagtttccacagcagtacggtctatcacgacct
cccctccgaatgcaggcccccatccaccctcaggcctccttccccccatcgttcttcagt
ggacctccaatggcgcaccgcgggctgcagtctccggtcctggagggtggggagggctcg
atgggagcgggtccaggtggggtggctgaggatctgaagggtgtggtgagaggacttccc
ctacagatgcaccagcagcccctgcgcatcaacagctttggagaagagaatttggactct
ctgctgggcgatactttagatggccaggcttcctcagggctggatgctctgggccagcag
cagcagcagcagttggcggctcgtgtgggtcagtggggtgaacagtctcccttcctgcag
gccggtatggcccccttccccctggctcatcttggccagccgggtctgcgactccctcag
cagctcctcagaggcggctggggcctgggccctgcagcagaggaggagcccagacctgcc
atgcacagatatcccggtcttctgcgtgaaatgctccctcaagaccagtatgagcagcgg
gagccggccgacatgccccctcctcagtctcgcctccttcagtaccgtcaagtccagctc
cgaaaccccggagacctgccgtctccctcttcctccagctcaaaccacacctcgggcccc
aaccccttcacagttccaggtccaccctccttccccgacaccggccgagagctgccaatg
ggcggccagcccttccagcagcaccaagccttccatcaggcttcctactccctgccgccc
gagcacacagcgggacctcttccggtcaaatacctcctgcaggaggcccactggccccac
cctggcctaccccagagccacgtgctgggccacggcgtgccttttggcatgcagaccatg
gcgcacaggcaagagcagggccccctcacgcagctgcagcaccagcagcagaaacagcag
ctccaggccccacagagctccctgcacagtgtagaagagtatgaaccacggggccccggg
aggcctctgtaccagaggagaatctcccccagctccccccagccatatccggacagcctg
gaccctcaggaccaccccacgccctcctacagatacccctcagcagacctgtggctgggc
agcagtggccccgggcccggcccaaaccccgctcctctccaaaacattccatgtaacgga
gcgagccacctcgtccctcacagggaggttttagtttcaaaggcgatgagtgtctcagag
gagcagcagtcgcctcaccccgccagcaccgcatctctccagcaccacggacagttccca
cccctcatgcccagcaagcagaccccgcccgacccgggagggggcaacaccagcccaggg
ggcccccaggggcccggcaaccccaagcccccgaccatgtcctacgccagcgccctccga
gcccctccaaagccccggccgctgcccgagcaggtcaagaagaacagtgaccccatctct
ctgttacaggaacttagcataggcagttcaaacagtagcaatggctattacacgtatttt
aaataa |
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