Carassius gibelio (silver crucian carp): 127941416
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Entry
127941416 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127941416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127941416
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127941416
Spliceosome [BR:
cgib03041
]
Complex A
U2 snRNP components
U2 related factors
127941416
Complex B
127941416
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
127941416
NCBI-ProteinID:
XP_052392382
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All DBs
Position
A21:complement(21713500..21727136)
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AA seq
1039 aa
AA seq
DB search
MCERHCNETMARESRHYRKRSSSKGRSGSRSPDSKRGQKEEAAGSRVRERSRRERTRSRE
RHRDHKRARRSRSRDRRRSRSREHRSRGRSKEKSENTEPSADKKKMKEEKKEKEKEKEEE
KPEDQDFDQNTLEEEMRKRKERVEKWREEQRKKAIVNIGELRKELEEMKQGKKWSLEDDD
DDEEAPAEPDEEEEEEEAEKEKEEVAVMEEETQMEQEAEEELDPLDAYMEEVKEEVKKFN
MGTMRGGTDKQKGSVSKVVTVMKTNKMLHTTKKKGELMENDQDAMEYSSEEEEVDLQTAL
TGFQTKQRKVLEPVDHQKIEYESFRKNFYVEVPELARMSPEEVNEYRLELEGINVKGKGC
PKPIKTWVQCGISMKVLHAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFL
LPMFRHIMDQSPLGEGEGPIAVILTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISE
QIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIV
DNVRPDRQTVMFSATFPRSMESLARRILSRPIEVQVGGRSVVCSDVEQHVIVIEEEKKFL
KLLEILGHYQEKGSIIIFMDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKN
GACRLLVATSVAARGLDVKQLILVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEQQ
SRYSGEIIKALELSGSPVPPELELLWTNFKEHQKAEGKSIKSSSGFSGKGFKFDETEHAL
ANERKKLQKAALGLHDSDDEDAALDIDEQIESMFNSKKRVKDLSAPGAAGAAGGGVSGSV
SGVSGQSTPSAGNIQKLEIAKKLALKIQAQKNLGAEAQDVMQQATNTFLRGGKMIAPTVS
AKTIAEQQAEKINAKLNYTPVEKLEEERQAAEATDTVKRYEEELEINDFPQTARWKVTSK
EALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANEMAVQKSKAEITRLIKEE
LIRLQNSYQPTNKSRYKVL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgagcgacactgcaacgaaaccatggcgcgagagtcacggcactacaggaagcgc
tcgagctcgaagggccggtcgggcagcaggtcaccggactccaagcgcggtcagaaggag
gaggctgctggatcccgtgtacgcgagcgcagccgcagagagaggacacgcagccgagag
cgccacagagaccacaagagagcgaggcgctccaggagtcgggacaggagacgctcccgc
agccgagagcaccggagccgagggaggagcaaggagaagtctgagaacaccgagccgtcc
gctgacaagaagaagatgaaggaggagaagaaggagaaggagaaggagaaggaggaggag
aagcctgaagatcaggacttcgaccagaacactctggaggaggagatgaggaagaggaag
gagcgcgtggagaagtggagggaggagcagaggaagaaagccattgtgaacatcggagaa
ctgaggaaggagctggaggagatgaagcagggcaagaagtggagtctggaggacgatgac
gatgatgaagaagcacctgccgagccggacgaagaggaagaggaagaggaggcagagaaa
gagaaagaggaagtggctgtgatggaggaggagacacagatggagcaggaggctgaagag
gagctggacccgctggacgcttacatggaggaggtcaaggaggaggtcaagaagttcaac
atgggcaccatgagaggaggaactgacaagcagaaaggcagtgtgtccaaagtggtgacc
gtgatgaagaccaataagatgttgcacaccaccaagaagaaaggagagctgatggagaac
gaccaggacgccatggagtattcatcagaggaagaggaagtggacttgcagacggccctc
acaggcttccagaccaaacagaggaaagttctggagccggttgatcatcagaagatcgag
tacgaatccttccgtaagaacttctacgtggaggtgccagagctggccaggatgagtcct
gaagaggtgaacgagtaccgtctggagctggaggggatcaacgttaaaggcaagggctgt
ccgaagcccatcaagacctgggtgcagtgtgggatctccatgaaagtgctgcacgcgatg
aagaaacacaactatgagaagcccaccccgatccaggcccaggccatccctgccatcatg
tctggacgagacctcatcggcatcgctaaaacaggaagtgggaagaccatcgccttcctg
ctgcccatgtttcggcacatcatggaccagtctcctctgggagagggagaaggacccatc
gctgtgatcctgacaccgacgcgagagctagcgctgcagatcaccaaagagtgcaagaag
ttctccaagtctctgggtctgcgtgtggtgtgtgtgtacggcggcacgggcatcagcgag
cagatcgcagagctgaagcgcggcgcagagatcatcgtgtgcacaccgggacgcatgatc
gacatgctcggagccaacaacggtcgcgtgaccaatctgcgcagggtcacgtatgtggtg
atggacgaggctgaccgcatgttcgacatgggcttcgagccgcaggtgatgcgtatcgtg
gataacgtgcgtcccgaccggcagaccgtcatgttctcggccacgttccctcgctcgatg
gagtctctggcgcgcaggatcctgtccagacccatcgaggtgcaggtgggcggcaggagc
gtggtgtgctcagacgtggagcagcacgtgatcgtgatcgaggaggagaagaagttcctg
aagctgctggagattctgggtcactatcaggagaagggctccatcatcatcttcatggac
aagcaggagcacgctgacggactcctcaaagacctgatgaaggcctcgtacccctgcatg
tctctccacggaggcatcgatcagtacgacagggacagcatcatcaatgacttcaagaac
ggcgcgtgtcgtctgctggtggccacgtctgtggcagcgcgaggtctggacgtcaagcag
ctcatcctggtcatcaactacagctgtcccaaccactacgaggactacgtgcaccgcgcc
ggacgcacgggacgagccgggaacaagggttatgcgtacaccttcatcactgagcaacag
tctcgttactccggagagatcatcaaagcgctggagctgtccgggtcgcccgtcccgccg
gagctcgagctgctctggaccaacttcaaagagcatcagaaagctgaggggaagagcatc
aagagcagcagtggattctctgggaagggttttaagtttgacgagacggagcatgcgctg
gctaacgagaggaagaagctgcagaaggctgcgttaggtctgcacgactctgacgacgag
gacgcagctctggacatcgacgagcagatcgagagcatgtttaactccaagaagcgtgtg
aaggatctgtctgctccgggcgctgcgggggccgctggggggggtgtgagcggatccgtg
tccggtgtgtccggtcagagcactccatccgccggaaacatccagaaactggagatcgcc
aagaaactggccctcaagatccaggcgcagaagaacctcggtgctgaggctcaggatgtg
atgcagcaggccacaaacaccttcctgcgcggcgggaagatgatcgctcccaccgtctca
gccaagaccatcgcagagcagcaggcggagaagatcaacgccaaactgaactacacaccg
gtggagaagctggaggaggagcggcaggccgccgaggccacggacaccgtcaagagatac
gaggaggagctggagatcaacgacttccctcagacggcgcgctggaaggtgacgtctaaa
gaggctcttcagcgcatcggagagtattcggaggcggccatcactatcagaggaacatat
ttcccaccgggcaaagagcccaaagagggagagcgcaagatctacctggccatcgagagt
gcgaacgagatggccgtgcagaagagcaaagcagaaatcacccggctgatcaaagaggag
ctgatccgtctgcaaaactcctaccagcccaccaacaagagcagatacaaggtcctgtag
DBGET
integrated database retrieval system
