Carassius gibelio (silver crucian carp): 127941421
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Entry
127941421 CDS
T08819
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127941421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127941421
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
127941421
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
UIM
RAP80_UIM
TrmE_N
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
127941421
NCBI-ProteinID:
XP_052392389
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All DBs
Position
A21:22127374..22145447
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AA seq
840 aa
AA seq
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MPRRKRAADEGGRRVKVSSVEHNDEETLVISDSEHEEEEDCSFKRSSWTTRLERRENQSH
LQKMTEEDMLNLAMRLSTQEANRAAQRQELEDNDIQKAIEESLNESSLKALEGHDEAASS
TDQPQQNVTSEISTSPLPEMSDPSQKTSIHLSIRSSPAQVSSPPASTQDTTSDEQTVISN
TPELFRSVSESQSQTSPVFTRHGCLIHQPVVCVEKLSQDLIPASIDSNFHMQDGAAASIC
TYGSPSPKQEDSPFSKCPVFTQKDFKRKMYLPEDKDGRKNTNASEDDTHISNEDIHLPTQ
KSPNLKQAEDQTTLEENVKSDNETAPNTWNEFASHMDLHLTDEDDGSEEFISPSPVLHKN
IFQPVKTELSPTQSCISPAVFTPNPYTQDTQMSRSVLEEGSGALKGVEFKPSDCKPPHTS
LEKGECTISYFWGVPFCPMGQNPDEYTRVILCQMEVYEKSLKEAQRELLRKADWGEPVIP
GSSERPFGARRWKRHRAPQLSEDEEENDKDGEKENNRIDVEEEREEAKEESVVGSQEDAE
GRQCETYVVVSSPETKDEQEEKKPFFSQEEPVTAALNKHFRGSAPCETPDETQIQCSAEQ
EKEEAQNHVHCEEDDIVCPETQLTQNSTPEELMVTSPAQPQSHTGSEVIEVEEGGCAPVV
EEMMETEGLECPMCSKLFPLDKIEVHAALCNGEIYHQEEQLQEVVARRKRTKINLTEETP
RSGKSTQMEKWSFPEYPEHDNFCIEKKDLRANQENGLLSALDQTEQRQSGTDEPGPSEVS
TTSNCGLADPVVMGTSESVVCSAMTSCTSTAFIPQSENTDCLIDSSKNSQRLSRKRKFKR
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgccccgccggaagcgagccgcagatgaaggcggaagaagagtgaaagtcagcagtgtg
gagcacaatgatgaagagaccctggtcatatctgattctgaacatgaagaggaggaagat
tgctcatttaaacggtcctcttggacaacccggttggaaagaagggagaatcagtctcat
ctacaaaagatgacagaagaagatatgctgaacctggccatgagactgagcactcaggaa
gcaaaccgtgctgcccagagacaagagctggaagacaacgacatacaaaaagccatagaa
gaaagtcttaatgaaagctctttaaaagctttggagggtcacgatgaagcagccagctct
acagatcaaccacagcagaatgtaacaagtgagatatcaactagtccgctgccggaaatg
tctgatccatcacagaagacctccatacatctttcaataaggagttccccagctcaggtc
tccagtcctcctgcttccactcaggacacgacctcagatgaacagacagtcatcagcaac
actcctgagctcttcagatctgtctctgagtcccagtctcagacgtcccctgtcttcacc
aggcatggctgcttaattcaccagcctgtagtatgtgttgagaaactgagtcaggacctc
atcccggcaagcatagactcaaactttcacatgcaagatggcgctgccgcttccatttgc
acttacggatctccgtccccaaagcaggaagattcacccttttccaaatgcccagtcttc
actcagaaagacttcaaacgaaaaatgtatttgccagaggacaaagatggtcgtaaaaat
accaatgcaagtgaagacgatactcatatatctaatgaagatattcatttaccaacacaa
aaaagccctaacctaaagcaagcggaggatcagaccactctggaagagaatgtaaaatct
gacaatgaaactgctccgaacacctggaatgaatttgctagtcacatggacttacattta
acagatgaagatgatggcagcgaagagtttatttcccccagcccagtcttgcacaagaac
atttttcaaccagtcaagactgagctttcccctacccagtcctgcatctctccagctgtc
ttcacacccaatccttatacacaagacacacagatgtcccggtctgtcctggaggagggc
tcgggagcattaaaaggtgtggaattcaaaccctccgactgtaaacctccacatacttca
ttggaaaaaggagaatgcactatttcttacttctggggtgtgcctttctgtcccatgggg
caaaacccggatgagtacacgcgtgtgattttgtgtcaaatggaggtgtatgagaagagt
ctgaaggaggcccagcgagagctgctacgcaaagcagactggggagagccagtgattcct
ggctcatcagagaggccatttggtgcaaggagatggaagcgccacagagctcctcagttg
tccgaggatgaagaggagaatgacaaagatggagagaaagaaaataacagaatagatgta
gaagaagagagggaagaggctaaggaggagtctgtggtggggtcacaagaggatgctgag
ggcagacagtgtgaaacatatgtagtggtgtcttctccagagacaaaagatgagcaagag
gaaaaaaaacctttcttcagccaggaggagcctgtaactgccgctttaaataaacatttt
agaggaagtgctccatgtgaaactccagatgaaactcaaatacagtgttcagctgagcag
gagaaagaggaggcccagaatcatgtgcattgtgaagaggatgatattgtttgtccagag
actcagttgactcaaaacagcacaccagaagaactaatggtgaccagtcctgctcagccc
cagtctcatactggcagtgaggtgattgaggtagaggagggaggatgtgctcctgtcgta
gaagagatgatggagactgagggactggaatgccccatgtgctccaaactcttccctctc
gataagatcgaggtgcatgcagctttatgtaatggcgaaatataccaccaggaggagcaa
ttgcaagaagttgttgcccgaaggaaaaggaccaaaataaatttgacagaggaaactcca
cgatctggcaaatcaacacaaatggagaagtggagtttcccggagtatccagaacatgac
aatttttgcattgaaaagaaagacttaagagctaatcaggaaaacggcctgctttctgct
ctggaccagacagaacagagacagtctggcactgatgaacctggaccatctgaagtttct
acaacaagcaactgtggccttgccgatcctgtcgtgatggggacttctgaaagtgtagtc
tgctcagcgatgacttcctgtaccagtaccgccttcattcctcaatcagagaacactgac
tgccttattgactcctctaagaacagccaacgactctcaagaaagagaaaattcaaaaga
tag
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