Carassius gibelio (silver crucian carp): 127941792
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Entry
127941792 CDS
T08819
Name
(RefSeq) retinoic acid receptor RXR-alpha-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03320
PPAR signaling pathway
cgib04148
Efferocytosis
cgib04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127941792
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
127941792
03320 PPAR signaling pathway
127941792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgib03000
]
127941792
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cgib03310
]
127941792
Transcription factors [BR:
cgib03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
127941792
Nuclear receptors [BR:
cgib03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
127941792
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
127941792
NCBI-ProteinID:
XP_052393162
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Position
A21:8748369..8877233
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AA seq
501 aa
AA seq
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MDPFCIDIHMGFLKPQCSIPLPPQRGRAEACTCFSGMCALHQRRLSTDSSGHMTSSPLSS
PTSHRGMHPSLLSPTSLGPSGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMASPGMGY
GPSISPQLNSPMNSVSSSEDIKPPLGINGVMKVPSQPLGTPLSLTKHICAICGDRSSGKH
YGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCIIDKRQRNRCQYCRYQKCLAMGMKREVLL
HTAVQEERQRARDRNENEVESTSSVNEDMPVEKILEAELAVEPKTETYIETNVPMPSNSP
NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVK
DGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK
GLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKL
IGDTPIDTFLMEMLEAPHQMT
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggatcccttctgcattgatatacacatggggttcctgaaaccccaatgctcgatacca
ctgccacctcagagaggacgagcagaagcatgcacgtgtttcagcggaatgtgtgctctt
catcaacgcaggctttctacagactcctctggacatatgacgtcctctcctctcagttct
cccacatcccaccgggggatgcacccgtcactgctgagcccgacttctttaggcccctca
gggtctctgcactcccccatcagcactctgagctcacccatgaacggcctgggctctccc
ttctctgtcatcagctcacccatgggaccacattccatggcatcacccgggatgggctac
ggccccagtatcagtccgcagctgaactcgcccatgaactctgtcagcagctcagaagat
atcaagccgcccctgggcatcaacggtgtgatgaaggtgccatcacagcccttgggcacc
cccctgtccctcaccaaacacatctgtgccatctgtggcgaccgctcctcaggtaaacac
tacggtgtttacagctgcgaggggtgcaagggtttcttcaagaggactgtgcgcaaggac
ctgacttacacttgtcgagacagcaaggactgtattatcgacaaacgccagcgcaaccgc
tgccagtactgccgctatcagaagtgtttggccatgggaatgaaaagagaagtgttgtta
catacagccgtccaggaggagcgccagcgagcaagggaccgcaacgagaacgaggtggag
tcgaccagcagtgtgaacgaagacatgcctgtggagaagatcttggaagcggagctcgct
gtggagcccaagacggagacttacattgaaactaatgtaccaatgccctcgaattcaccc
aatgatccagtcacaaacatctgtcaggccgcagacaagcagcttttcactctagtggaa
tgggccaagaggatcccgcatttttcagagctcccgctggacgaccaggtcattcttcta
cgagcaggatggaatgagctcctcattgcgtcattttcacaccgttcgatagcagtgaaa
gatgggatacttttggccacaggattgcatgtgcaccgcaacagcgcccacagcgccgga
gtaggagccatatttgacagggtgctgacggaattggtgtcaaagatgagagacatgcag
atggataaaaccgagctagggtgccttcgagccatcgtcctcttcaacccagactccaaa
ggcctgtcaaacccaggtgaagtggaggcgctgagagagaaggtctatgcctctctggaa
gcctactgcaaacagaagtaccctgaacaacctggaaggtttgctaagctgttgctgcgg
ctccctgcccttcgttctattggactgaaatgtttggagcatctgttcttcttcaagctc
ataggagacacaccaatcgataccttcctcatggagatgctagaggcgccccaccaaatg
acataa
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