Carassius gibelio (silver crucian carp): 127942077
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Entry
127942077 CDS
T08819
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03420
Nucleotide excision repair
cgib04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127942077
09124 Replication and repair
03420 Nucleotide excision repair
127942077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
cgib03051
]
127942077
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127942077
Proteasome [BR:
cgib03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
127942077
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
127942077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
Dsc3_N
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
127942077
NCBI-ProteinID:
XP_052393589
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Position
A21:complement(909827..914802)
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AA seq
378 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDNFPVAGQKLIYAGKILSDDTALK
EYKIDEKNFVVVMVAKPKSAPASASSSSAATATSSASSTTASSASSADPATETPSESAAK
EDKPSEEKPSGGAAPSSTPVSSGSSPNANIFEEATSALVTGQSYENLVTEIMLMGYERDR
VVAALRASFNNPDRAVEYLLTGIPAESEGSVGGADPVVPAGGAPVVSTGLSSPSSTAPSQ
PSTASGANPLEFLRNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQ
MLNEPVQEAGQGGSGGGVAEAGGGAMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACE
KNENLAANFLLQQNFDDD
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcacgctgaaaaccctccagcagcagacgtttaaaatcgacatcgacgcagag
gagacggtaaaagccttaaaggaaaaaatagagaatgaaaagggaaaagataacttccct
gtggcgggacagaagttgatatatgcaggtaaaatcctgagcgatgacacggctctcaag
gagtacaagatcgatgagaagaactttgtggtggtgatggtagcaaagcctaaatctgct
ccagcatcagcttcctcatcatctgctgccacggcgacaagctccgcctccagcactaca
gcaagctccgcctcgtccgctgacccggccacagaaaccccgtccgagagcgcggccaaa
gaggacaaacccagcgaggagaaaccctccggcggtgctgcgccctcctctacacccgtc
agttctggttcttcaccaaatgcaaacatatttgaagaggcgacatccgcgctggtgacg
ggtcagtcctacgagaacctggtgacggagatcatgctgatgggatacgagcgagaccga
gtggtggccgcactgagagccagtttcaacaatcctgaccgcgccgtcgagtacctgctc
acgggtattcctgcggagagcgagggcagtgtaggaggtgctgaccccgtggttcctgca
ggaggcgctcctgttgtgtccacaggcctctcttcaccgtccagcaccgccccgtcgcag
cccagcacagcttcgggagcgaatcctctggagttcctgaggaaccagccccagttcctg
cagatgagacagatcatccagcagaacccatctctccttccagctctcctacagcagatc
ggcagagagaaccctcagctcctgcagcaaatcagcagtcatcaggagcagttcatccag
atgcttaatgagccggtgcaggaggcggggcaaggaggcagcggtgggggcgtggccgag
gcaggaggcggggccatgaactacatccaggtcacaccccaagagaaagaagctattgag
aggctaaaagcccttggattcccagaaggactcgttatacaggcctactttgcttgtgag
aagaatgaaaatttggctgcaaacttccttttacaacagaactttgatgatgattag
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