Carassius gibelio (silver crucian carp): 127942180
Help
Entry
127942180 CDS
T08819
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03082
ATP-dependent chromatin remodeling
cgib03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127942180
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127942180
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgib01009
]
127942180
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgib03021
]
127942180
03036 Chromosome and associated proteins [BR:
cgib03036
]
127942180
Protein phosphatases and associated proteins [BR:
cgib01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127942180
Transcription machinery [BR:
cgib03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127942180
SWI/SNF complex
127942180
Chromosome and associated proteins [BR:
cgib03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127942180
PBAF complex
127942180
SWI/SNF complex
127942180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
127942180
NCBI-ProteinID:
XP_052393778
LinkDB
All DBs
Position
A21:7842772..7850064
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASMEERKKI
VASSHDHGYTNLATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRSSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNSGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacattcggacaaaaaccaataaaatttcaactcgaagaagatggg
gatttttacatgataggctccgaggttggaaactacctgcgtatgttcagaggctctctg
tataagcggtacccgtcactatggagacgtctcgcatccatggaggagaggaagaaaatt
gtagcatcatcacatgatcatggttacacaaatttagccaccagtgtgaccctgctgaag
gcgtctgaatgtgaggagatcttcgaggggaatgatgagaagtacaaggctgtgtccatt
agcacagagcctccggcatatctcagggagcaaaaagctaagaggagcagtcagtgggtg
cccaccctgcccaacagctcccaccacctggacgcagtgccttgctccaccactatcaac
agaaacagaatgggacgtgacaagaaaaggacctttccattatgtttcgatgaccacgac
cccgcagtcatccacgaaaacgcttctcaggcagaggtcctggtgcctatccgcctggac
atggagattgatgggcaaaagctcagagatgccttcacctggaacatgaatgagaaactt
atgacgccagagatgtttgctgagatcctgtgtgatgacctggatttgaatcctctggcc
ttcgtccctgctatcgcctcggccattagacagcagatcgagtcctatcccaccgacagc
attctggatgagcagacggaccagagggtcatcattaagctaaacattcacgtggggaac
atctctctggtggaccagttcgaatgggacatgtcagagaaggagaactcgccagaaacg
tttgcattgaagctctgctctgagctgggccttggaggagagtttgtcaccaccattgcc
tacagcatccgcggacagctcagctggcatcagaggacgtacgccttcagtgagaaccca
ttaccaactgtggagattgccatccggaactcaggtgatgccgatcagtggtgccctctc
ctggagaccctgacagatgcagagatggaaaagaaaatcagagatcaggacagaaacacg
aggcgtatgcgacgacttgccaacaccgcccctgcttggtaa
DBGET
integrated database retrieval system
