Carassius gibelio (silver crucian carp): 127942197
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Entry
127942197 CDS
T08819
Name
(RefSeq) DNA repair protein RAD50-like isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03440
Homologous recombination
cgib03450
Non-homologous end-joining
cgib04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127942197
03450 Non-homologous end-joining
127942197
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
127942197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgib03032
]
127942197
03400 DNA repair and recombination proteins [BR:
cgib03400
]
127942197
DNA replication proteins [BR:
cgib03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
127942197
DNA repair and recombination proteins [BR:
cgib03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
127942197
BRCA1-C complex
127942197
NHEJ (non-homologous end-joining)
MRX complex
127942197
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
AAA_21
Rad50_zn_hook
AAA_15
SMC_N
SbcC_Walker_B
ABC_tran
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
127942197
NCBI-ProteinID:
XP_052393817
LinkDB
All DBs
Position
A21:18529005..18561520
Genome browser
AA seq
1310 aa
AA seq
DB search
MSKIEKMNILGVRSFGVEDKDEQVITFFRPLTVLVGPNGAGKTTIIECLKYITSGVFPPG
SKENTFVHDPKDVHETDVKAKIRLHFRDVNGDPVAIERFMQSIQKGKKAEFKSHGGVIER
GRKVSPILNCAEIDREMISALGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDEIFSAT
RYIKVLDKLRELRKKQTIIVKTCQTELKYLKQNKEKAREFRELLSTKEAQLSSSKESVQC
IKSQMDSLENELESIESSLSKLMKLDNDIKALDSRKKQMEDDNRELEEKMERVFQGSDDQ
LQDMYQNHQRTVKEKEHKLMECEREHEQACQECQGMNPIKSKLLFEQGCLQSEANIHTQN
IEKRDTQVKSLASSLELEGYDRTPLNERHLESFHRQVKERLDQDTEALNQTMHDMQQKEE
QKQQSIDDLRDKKTGLERTIELKKDIQAKKQQELENIKSDLQRLEGSSSRLQELDTELQK
AERELDNAVQSCMVDSLKAEVIELQKEKTKLDQAQRKLDQEMELLNTHTVARTQMEMLTK
TKMEKEEQVKKIESTHNEELVSLLGHFPSKKELQDWIYSKTKEISSTRELLSETNKELAS
VEQKKTNFTAEIKHKEEQLASYEERLFNVCGSQDFESDLNKLKDELEKCSKQRAMLVGET
AIYSQFISQLTEEGEPCCPVCQREFPSEAELQDVINDMQSKLRLISDKLKNTEHDLKRKE
HRSEEMVALKPIRQSIVKLQEKDLPELRNELQGVNRDIEKLKGDTEEQKTLLCTMMSEEE
TAKACLQDLLLMDRYQLDLKDVERKIAQHAAKLQGVDLSRTMQQVSQEKQETQHRLDTTC
SKMETKRKLIQDKQDQIQALRSSVNEIRGGKLQISSNMQKRQQLEEQCVAFTTEIQTLHR
DIQDAEEQASPLAAALEKLQHEKQDLAERKRQKQEEGQKKISAIKEKVQNLTLLENVITK
YIEDGKDSNKEQKKNELQEVEKRLHEAEKQRDKISKDIGNIRQDIDTQKVQERWLQDNLT
LRKRVEELKEVSRKHEDLLKEKGNMQDLQMYNEEQEVKKQKLEDLKENHNVALGRQKGYE
GEILCFRKELSEDQYCRADDLYRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKMKE
INKIIRDLWRSTYRGQDIEYVEIHSDVDENASAGLKRRTYNYRVVMVKGDTAFDMRGRCS
AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQRNF
QLLVITHDEDFVELLGRSNYVEYFYRIRKNRDQCSEITKCSINTLNSYLH
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgaaaagatgaatatcctgggagtaaggagttttggagttgaggataaa
gacgaacaagtgatcaccttcttcaggcctctgacggtccttgtgggacctaatggagct
ggaaaaacgaccataattgagtgtctcaagtacataacttcaggagtctttccaccagga
agcaaagaaaacacatttgtccatgatccaaaagatgttcatgagacagatgtaaaagca
aagatcagactccattttagagacgtgaatggcgatcctgtggcaatcgagaggtttatg
caaagcatacagaagggcaagaaagctgagtttaaatctcatggtggtgtcattgagcgt
ggacggaaagtgagcccgatccttaattgtgctgaaatagaccgtgagatgatctcagca
ttgggcgtctccaaggctgttatcaaccatgtcatcttctgccaccaagaagagtccaac
tggcctctcagtgaaggaaaggccctcaagcagaagtttgatgagattttctcagccaca
aggtacataaaggtgttggacaaactgcgggagctgaggaagaagcaaaccatcattgtc
aaaacctgccagacggagctcaagtacctgaaacagaacaaagaaaaagcgcgagagttt
agagagctgctgtccactaaagaggctcagctgtcttcctctaaagagagtgtccaatgc
atcaagagtcagatggactcattggagaatgaattggaaagcatagagagcagcctcagc
aaattgatgaagttggataatgacatcaaagctctggacagcaggaagaaacagatggag
gatgataaccgggaactagaggaaaagatggagcgggtgtttcagggctcagatgatcag
ctgcaggacatgtatcagaaccaccagaggactgtgaaggagaaggaacataaactaatg
gagtgcgagcgtgagcatgaacaggcttgccaagagtgccaggggatgaatcccatcaaa
tctaaactactatttgagcaaggctgtctgcagtcggaggcgaatattcacacacaaaac
attgaaaagagggacacccaggtcaagagtttagcatcttccctggagttggagggttat
gaccggactcctcttaatgagcgacacctcgagagcttccacagacaagtcaaagaaaga
ctggaccaagacacggaggcccttaaccaaactatgcatgatatgcagcagaaagaggaa
cagaagcagcaaagcatcgatgatctccgagataagaagacaggtctagagagaaccatt
gagctgaagaaagacatacaagccaagaaacaacaggaactggaaaacatcaagtctgac
ctccaaagactggagggctcttcaagcagactacaagagctagacactgaacttcagaaa
gcggagcgtgagcttgataatgccgtgcagtcctgtatggtggacagtctaaaggcagag
gtcattgaactacagaaggagaaaactaaactggatcaggcccagcgcaagttagaccag
gagatggaattgctcaacacacacaccgtggcacgcacacagatggagatgctcacaaag
accaagatggaaaaagaggagcaagtgaagaagatcgagtcgacacataatgaagagctg
gtgtctctgctgggacacttcccaagcaagaaagagctacaagactggatctactccaaa
accaaagagatcagctccaccagagaactgctcagcgaaacgaataaggaacttgcatca
gtagaacagaagaagacaaactttactgcagaaatcaaacacaaggaagagcagttggcc
agttatgaagagagactttttaatgtgtgtggcagtcaggactttgaatcggacttgaac
aagctgaaggatgagttggagaagtgttcaaaacagagagccatgctggtgggggagaca
gccatctacagtcagttcatcagtcagctgacggaggaaggcgagccctgctgtcccgta
tgtcagcgtgagttcccatcagaggcagagctccaggacgtcattaatgacatgcagtcc
aagctgcggctcatctcggacaaactaaagaacactgagcatgacctgaagaggaaggag
cataggagtgaagaaatggtcgcactgaagccaatcaggcagtctatagtgaagctccag
gagaaagatctgccagagctcagaaatgaactccagggtgtgaatcgagacattgagaag
ctgaaaggtgacactgaggagcagaaaacattgctctgcacaatgatgtctgaggaagaa
acagccaaagcctgtctgcaggacctattactcatggatcgctatcagcttgacctgaag
gatgtagagaggaagatcgctcagcatgcagccaagttgcagggagttgacctcagtcgt
acaatgcagcaggtcagccaggagaaacaagagacccaacaccgcctggacacaacctgc
agtaagatggagacaaagaggaaactgatccaggacaaacaggatcagatccaggccttg
aggagcagcgtaaatgagattcgtggaggaaagctccagatctccagcaatatgcagaaa
cgtcaacagttggaggagcagtgtgtggcgttcaccactgagatccaaacactccacaga
gacattcaagatgcagaggagcaggcgtctcctctagctgctgctctggagaagctccag
catgaaaaacaggaccttgctgagcgcaagaggcagaaacaggaggaaggacagaaaaag
atcagtgcaatcaaggaaaaagtacaaaatctgacccttcttgaaaatgtgattaccaag
tacatagaagacggcaaagacagcaacaaagagcaaaaaaaaaatgagctacaagaggta
gaaaaacgactacatgaggctgagaaacagcgagacaagatcagtaaagacatcggcaac
attcgccaagatattgacactcagaaggttcaagagcgctggctacaggacaacttgacc
ttacggaagcgtgtggaggagctaaaagaagtgtccaggaaacatgaagacttacttaaa
gagaaaggcaacatgcaagatctgcaaatgtacaatgaggagcaagaagtaaaaaagcaa
aagttggaggacctgaaagagaaccacaatgtggcacttggtcgtcagaaaggctatgag
ggcgagatcctctgttttcgtaaagagctcagtgaggaccagtattgccgggccgatgat
ctctacagagacaaaatgattgtgatgagaacaacagagttggccaataaggacctggac
atctactataaagccctagaccaaacgataatgaagtttcacagcatgaagatgaaggaa
attaataaaatcatcagagatttatggcggagcacgtacagaggacaagacatcgagtat
gtggagatacactctgatgtggatgaaaacgcctccgctggcctgaaaagaaggacctat
aactatagagtggtaatggtcaaaggagacaccgcttttgacatgcgtggacgttgcagt
gctggacaaaaggttctggcctctctcatcatacggttggctctggctgagacgttctgt
ctgaactgtgggattctggcactggatgagccaactaccaacctagacagagagaatata
gagtctttggcacacgcactggtggagataattaagagtcgttctcagcagcgtaacttc
cagcttcttgttatcacccatgatgaggatttcgtggagctcctgggacgatccaactat
gtggagtatttctacaggatccggaagaaccgggaccagtgttcagagatcacaaagtgt
agcatcaacactctcaactcctacctgcactga
DBGET
integrated database retrieval system
