Carassius gibelio (silver crucian carp): 127942509
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Entry
127942509 CDS
T08819
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like isoform X1
KO
K12012
tripartite motif-containing protein 35
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgib04121
]
127942509
Ubiquitin system [BR:
cgib04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127942509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AIG1
zf-B_box
zf-RING_UBOX
MMR_HSR1
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
U-box
RsgA_GTPase
zf-RING_2
zf-RING_5
Prok-RING_4
FeoB_N
zf-Nse
zf-RING_10
DUF4200
Baculo_PEP_C
UvrA_DNA-bind
Guanylate_kin
AAA_22
Sigma54_activat
zf-RING_6
Caudo_TAP
Dynamin_N
DUF2325
ABC_tran
Tweety
Motif
Other DBs
NCBI-GeneID:
127942509
NCBI-ProteinID:
XP_052394239
LinkDB
All DBs
Position
A3:complement(31955500..31963163)
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AA seq
513 aa
AA seq
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MASQSEEDYICPVCCDIFKTPVFLSCSHSVCKECLHQFWRTKGTQECPVCRRRSSRDNPP
VNLVLKNLCESFLKERNEVRSSGSEEICSLHSEKLKLFCLEDKQPVCLVCINSKKHDNHK
FRPIDEVVSSYKEELNTALKTLQRKLKHNETMKGEFEETVENIKSQAEHTEHQIKQQFET
LHPFLRDEEEATITALREEEEQKKQMMKKRLEEINTHISALSLSIRDMEEMMNASDVCFL
KKFPVSMERVQISSQPDPQTPSGALIHVPRYLGNLLFRVWKKMQDIVQNKSERRLVLLGR
SGVGKSAAGNTILGQKEFRSEISVTAVTCECSAAHTTVSDRSVTVVDIPGFTDTQMKHEG
LMTEIMKSVDLSSPGPHAFLIVFPVNLRFTEHDQRILEQTEMMFGQEVLKYSIILFTYGD
QLKGKSIKDLIKRNSRMRHLVQESGDRYHVFNNEDQNNREQVTDLLQKIDTMIEKNGGYY
SHQMLEEAQRRREDTRRGRGEKTAPKSKSGKCV
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacagtctgaagaagattatatctgtcctgtttgctgtgatatcttcaagact
cctgtgtttctgtcatgcagtcacagtgtctgtaaagagtgtcttcatcagttctggaga
accaaaggaactcaggagtgtcccgtctgcaggagaagatcctcaagagacaatcctcca
gttaatctagtgttaaaaaacctgtgcgagtcgttcctgaaggagaggaatgaggttcgt
tcatcaggatctgaggagatctgcagtttacacagtgagaaactcaagctcttctgtctg
gaggacaaacagccggtgtgtttagtgtgtattaactcaaagaaacacgacaatcacaaa
ttcagacccatcgatgaagtggtttcatcatataaggaggagctcaatacagcactgaaa
acattacaaagaaaactgaaacacaatgaaactatgaaaggagagtttgaggaaacagtt
gaaaatatcaagtctcaagctgagcacacagagcatcagattaaacagcagtttgagacg
cttcatccgtttctcagagatgaagaagaagctacaatcactgcactgagagaggaagag
gagcagaagaagcagatgatgaagaagaggctggaggagatcaacacacacatctcagct
ctttcactctcaatcagagacatggaggagatgatgaacgccagtgacgtctgctttctg
aagaagtttccagtctcgatggaaagagtccagatctcatcacagccggatccacagact
ccttctggagctctgattcatgtgccacgatacttgggaaacctgctcttcagagtctgg
aagaagatgcaggacatcgtccagaacaagtcagaaagacgattagtgctgctgggaaga
tctggtgttgggaagagtgcagctggaaacacaatactgggacagaaagagttcagatct
gagataagtgtgactgcagtgacctgtgaatgttcagctgctcacaccactgtttcagac
agatctgtgactgtagttgatattcctggattcactgacacacagatgaaacatgaaggg
ttaatgacagagatcatgaaaagtgttgatttatccagtcctggaccacacgcttttctc
attgtgtttcctgtgaatctgagattcactgaacatgatcagcggattcttgagcagact
gagatgatgtttggtcaggaggtgttaaaatactccatcattctcttcacttatggagac
cagctgaaaggaaagtccattaaggatctcattaagaggaacagtcgaatgagacatcta
gttcaagagtctggagacagatatcacgtcttcaacaatgaagatcaaaataatagagag
caggtgacagatctgctgcagaagattgacacaatgatagagaagaacggaggatattac
agtcatcagatgcttgaagaagctcagagaagaagagaggacaccagaagaggacgagga
gagaaaacagcaccaaagtcaaagtcaggaaagtgtgtgtag
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