Carassius gibelio (silver crucian carp): 127944528
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Entry
127944528 CDS
T08819
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127944528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127944528
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127944528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
127944528
NCBI-ProteinID:
XP_052396488
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Position
A23:24538362..24565809
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AA seq
682 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDVYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETLEEAE
YEEEEEMPTSPTVASTLDPLQQGRLYTCLDQMRAVLGDSIPDSTLTQAALKHDCDPHRAL
DFVLTEENTSTHAPPARTNSQPEPITTAAPQKAKAREAPESCVEAEVVPKVARMTVSGKK
QTMGFDVRSAEENGIGAPSVRRGPSPEVTTPPATENLSKPSAVNEDSTAPTPTRPTGKSK
QPLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEII
SKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTRSKAADLTAWYTGPCLLEQIDAFKPPQR
SVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKLLAMPPNETCTVKGITLHDEALD
WAAAGDHVSLTVTGMDIIKINVGCIFCDPKEPIRACTRFRARILLFNIEVPITQGFPVLL
HYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKEL
GRFMLRYVGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgatgatgatgac
gtgtacgggcagtcagtggaagatgactactgcatctctcctgccactgccgcacagttt
atctattcacgtcaagactcgaggcaggctcgacatgtagaaactctggaagaggcagaa
tatgaggaggaagaggagatgcccacctctcccactgttgcaagcacgctagacccacta
cagcaaggtcggttgtatacttgtttggatcagatgagagccgtgctgggggattcaatt
ccagactccacattaactcaggcagctctgaaacatgactgtgaccctcacagagccctt
gattttgtactaactgaggagaacaccagtacacacgcccctccagccagaaccaactca
cagcccgagcccatcaccacagctgcaccacagaaagctaaagcacgggaggctccagag
agttgtgttgaagcagaggtcgtcccaaaggttgcccgcatgactgtgtcaggcaagaag
caaaccatgggctttgatgtgcgaagtgcggaagaaaatggcattggtgccccatcagtt
cgaagagggccgagtccagaggtcaccactccaccagccacagagaacctatccaaacca
tcagctgtgaatgaagactctactgccccaaccccgactcgaccaactggaaagagcaaa
cagccgctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgttactcaac
ctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctcttatat
ctgctagggaacgttaataagagaaccatgcataaatatgagcaggagtccaagaaagct
ggcaaggcctcatttgcttatgcgtgggtactggacgaaacaggagaggagagagacaga
ggagtgaccatggatgtgggcatgaccaagtttgagactgactcaaaagttattactctg
atggacgcaccaggacacaaagacttcattccgaacatgatcacaggggcagcccaggca
gatgtggctgtgttagtcgtggatgccagccgtggggagtttgaggccgggttcgaggct
ggggggcaaacccgtgagcacggcctgcttgttcgatctcttggagtcacacagcttgct
gttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatcatc
tcgaagctcggtcactttctgaagcaggctggttttaaggattccgatgtgttttacatc
cctaccagcggcctatcaggagagaatctgaccactaggagtaaagctgcagatcttaca
gcctggtacactgggccatgcctactggaacagatagatgcatttaaaccaccccagagg
tccgtggagaagccattcaggctttgtgtctcagacgtcttcaaagatcagggctctgga
ttctgtgtgactgggaagattgaggctggcttcattcagacaggagataaacttctggcc
atgcctcctaatgagacctgtactgttaaaggcatcactcttcatgatgaagctttagac
tgggcagctgctggtgatcacgtcagtctaactgtaactggcatggacatcatcaaaata
aatgttggatgtatattctgtgatcctaaagagcccatcagagcctgtacaagattccga
gcaagaattctactctttaatatagaggttcccatcacacaaggcttcccggtactgtta
cattatcagactgtgagcgaaccagccactattaggaagttagtcagtgtattacacaag
agcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaacgctgtg
gtggagattcagacacagaggcctgtggctctggagctctataaggactataaagaactg
ggacgcttcatgctgagatatgtgggctccaccattgctgctggagttgtcacagagatc
aaagagtaa
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