Carassius gibelio (silver crucian carp): 127944561
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Entry
127944561 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127944561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127944561
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127944561
Spliceosome [BR:
cgib03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127944561
Complex C
U5 SnRNP specific factors
127944561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Motif
Other DBs
NCBI-GeneID:
127944561
NCBI-ProteinID:
XP_052396542
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All DBs
Position
A23:complement(8299257..8308814)
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AA seq
808 aa
AA seq
DB search
MAGDSSEKKEPDAAGKERESRKRSRSRSRDRDRKGSPGRERKRNRSRERKRSRSRSKSPE
RDRRQKDKERDTRDRNRKERERDRDRRDKDRSKRSRSTSPKSRDLKIKREKDLKKEEEEK
DEKKEKVQPLSLEELLAKKKAEEEAESKPKFLSKAEREAEAIRRREQQTEDRRKQLDEER
KKRRIFQDIGRKMLEDPQERERRERRERMERENNGNEEDDGRQKIREEKDKGKELQAIKE
RYLGGMKKRRRTRHLNDRKFVFEWDASEDTSTDYNPIYKEKHQVQLYGRGFIAGIDLKQQ
KRDQSQFYGELMEKRRTLEEKEQEEVRLKKVRKKEAKQRWDDRHWSQKKKEEMIDRDWRI
FREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDII
GVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAVILAPTRELAQQIEEETIKFG
KPLGIRTVAVIGGISREDQGFKLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD
RMIDMGFEPDVQKILEHIPVTNLKPDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPAA
VERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLMNVLASGFEPPIIIFVN
QKKGCDVLAKSLEKIGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIHD
VSMVLNYDMAKNIEDYIHRIGRTGRAGKSGMAMTFLTKEDAAVFYDLKQAILESPVSTCP
PELANHPDAQHKPGTILTKKRREETIFA
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagactcgtctgaaaagaaggagccggacgccgcggggaaggagcgcgagtcc
cggaagcgcagtcggtctcgctccagggatcgtgatcggaagggatctccgggcagggaa
cgcaaacggaaccggtcccgtgaacgcaagcgctcccgcagccggtccaaatctcctgag
cgagatcgtcgtcaaaaagacaaagaaagagacaccagagacaggaaccgcaaagaaaga
gaaagagaccgggacagacgggacaaagaccgctccaagagatcaaggagcacttcccct
aaatccagggatttgaaaataaagagggagaaggatttgaagaaagaggaagaagagaaa
gatgagaagaaagagaaggtgcagcctctctctcttgaggagctgcttgctaagaagaaa
gcagaagaagaggcagaatctaagcccaagttcttgtctaaagcggagcgagaagctgag
gccatcagacggagggagcagcagacagaggatcgccgcaaacagctggacgaggagagg
aagaaacgaagaatatttcaggacatcggcaggaagatgcttgaggatcctcaggagaga
gaacggcgggaaagaagggagcggatggaaagagagaacaatgggaatgaagaagatgat
gggcgacagaagataagagaagaaaaagacaaaggaaaagagctgcaggccataaaggag
cgttatcttggcgggatgaagaaacggcggcgtacacgccatctgaatgacaggaagttt
gtctttgagtgggatgcgtctgaagacacatcaaccgactacaatccaatctataaagaa
aagcatcaggtccagctgtacggccgaggcttcatcgccggcatcgacctcaagcagcag
aagagagatcagtcccaattctacggagagctgatggaaaagagacggacccttgaagag
aaggagcaagaggaagtgaggctgaagaaggtccgaaagaaggaggccaagcagcgctgg
gacgaccggcactggtctcagaagaagaaggaagagatgatagacagagactggagaatc
tttagagaggactacagcatcacgaccaaaggaggaaagatccccaaccccatccgcaac
tggaaggagtactccctgccgccacacattctggaggtcatcgaaaagtgtggatataag
gatcccacacctatccagaggcaggccattcctattggcctacagaaccgtgacatcatt
ggtgtggccgagactggcagtggtaaaactgccgctttcctcattcctttattggtctgg
atcaccactctgcctaagatcgacaggatcgaggactcagatcagggaccatatgctgtc
attcttgcccccactcgtgagctggcacagcagatagaggaggagacaattaaattcggc
aaaccgctggggatccggaccgtggctgtgattggtggaatatccagagaggatcaaggc
ttcaaactcaggatgggttgtgagattgtcatagccacacccggtcgtttgatcgacgtg
ttggaaaaccgctacctcgtcctgagcagatgcacgtatgtggtactggacgaagccgac
agaatgattgacatgggctttgaacccgacgtccagaagattctggagcacattcctgtg
accaatctgaagccagacacagacgatgctgaggaccccgaaaaaatgatgcagaacttt
gagtcaggcaaacacaaatacagacagacggtcatgtttacggccactatgcctgctgca
gtggagcgcttggccagaagctacctccgccggcctgcggtggtgtacatcggctctgca
ggcaaacctcacgagagggtggagcagaaggtcatcctcatgtccgagggtgaaaagagg
aagaagctgatgaatgttttggcaagtggcttcgagccgcccatcatcatcttcgttaac
cagaagaagggttgtgacgtgctggctaagtctttggagaagattggatacaacgcttgt
acacttcacggtggtaaaggtcaggaacagagagagttcgctctgtccaatctaaaggca
ggagctaaggacatcctggtggccacagatgtggcaggcagaggtatcgacatccatgac
gtctccatggtcctcaactacgacatggccaagaacattgaggactatatccatcgtatt
ggccgaacgggtcgtgctggaaagagtggtatggcgatgaccttcctgaccaaagaagac
gccgctgttttctacgacctgaaacaggccatcttagagagtcccgtgtccacctgcccc
cccgagctggccaatcacccagacgcccagcacaagcccggcaccatcctcaccaagaag
aggagagaggagaccatctttgcctga
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