Carassius gibelio (silver crucian carp): 127944818
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Entry
127944818 CDS
T08819
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127944818
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127944818
09142 Cell motility
04820 Cytoskeleton in muscle cells
127944818
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgib00535
]
127944818
Proteoglycans [BR:
cgib00535
]
Extracellular matrix (ECM) proteoglycans
Others
127944818
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127944818
NCBI-ProteinID:
XP_052397084
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Position
A23:1313103..1341354
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AA seq
679 aa
AA seq
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MAVFSALHLLFLFQLLTASLAQIRPGPRGAPGAPGPLGPPGKDGIDGKPGPAGLPGKPGP
KGKAGKSGAAGSPGLPGLPGVDGLTGPDGPAGKDGPSGAAGDPGPPGPDGPPGRGRPGAL
GLAGANGLPGGPGPKGPPGPEGLPGLPGLPGPDGPPGLPGTLPEGSGDLLCPAICPPGPP
GPPGMPGFKGHTGHKGSKGEVGKDGEKGDQGPPGPSGMPGTVGLQGSRGLRGLQGPVGAV
GDRGLPGFRGKPGITGIIGKTGDVGERGPQGFRGPKGEIGKIGAKGLPGGVGPKGEPGIP
GRDGKDGTQGLDGEKGDAGRPGVAGEKGPNGLPGLPGKAGAKGAKGGVGSPGEMGEAGPS
GEPGIPGEIGIPGERGEAGPRGVAGGVGLVGNPGAQGVKGFQGVKGALGDPGLPGPTGIR
GGFGERGPVGAGGPKGDMGVAGSDGLPGENGEPGPYGPVGQKGESGKRGELGAKGVVGPQ
GETGSRGAPGKPGPMGFQGEQGFPGVAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAAN
LRRPLAPGAVGRPGPPGPPGKQGEVGSIGHPGSLGPPGYRGLPGDLGDPGPRGDVGEPGD
KGPVGKAIEGPTGDQGDPGLPGVHGIVKDGRDGAPGDPGEAGEAGRAGRPGHQGSPGICD
TSACQGAVVHGKSSNPKNH
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgttctcagcgcttcatctgctctttctgttccagctactgacagcgtctctc
gcgcagataaggccgggtcctcggggtgcacctggagcgccagggccgctgggaccccca
gggaaagatggcatcgacggtaaacctggcccggccggacttcctggaaagcctgggccg
aaaggtaaagcaggtaaatctggggccgcaggaagcccgggactgcctggactccctggt
gtggatggtttaaccggtccggacggtccagctggcaaggatggaccatcaggagcagca
ggtgacccaggaccccccggaccggatggaccccctggcagaggcagaccaggagctctg
ggtcttgctggagctaatggacttccaggtggaccaggacctaagggtccgccggggccc
gagggtcttccaggactccctggtcttccaggcccggatggacctcctggacttccagga
actcttcctgaaggcagtggtgatctgctgtgtccggccatctgtcctccgggtcctcct
ggaccgccgggaatgcctggattcaagggtcacacaggtcacaaagggagtaagggagag
gtggggaaagatggagagaagggtgatcagggcccgccggggccgtcggggatgccaggg
acagtgggtttacagggctctcgagggctgagaggactccaggggccagtgggagcagta
ggagacagaggattgcctggcttcagaggaaaacctggaatcactggcatcattggaaaa
actggtgatgttggtgagagaggaccgcaaggtttcagagggcccaaaggagagataggg
aaaataggcgccaagggactccctggaggcgtaggacctaaaggagaaccgggcatcccg
ggcagggacgggaaggatggcacccaagggctggatggtgaaaagggagatgctgggaga
cctggagtagctggtgagaaaggacctaacggcctgcctggtttgccaggaaaagctggt
gccaaaggtgccaaaggaggagttggcagtccaggagagatgggagaagcaggaccgtct
ggagagccaggtatacctggtgagattggcatccctggagagagaggagaggctggaccc
agaggtgtagctggtggtgttggactagttggaaaccctggagcgcaaggtgttaaagga
ttccagggtgttaaaggagctttaggtgatccaggtctgcctggtcctactggaatcaga
ggaggctttggtgagcggggtccagttggagctggaggtcctaaaggagacatgggagtt
gctggaagtgatggtttaccgggggagaacggggagcccggtccttatggtcctgttgga
cagaaaggagagtccggtaagcgtggtgagcttggagccaaaggagttgtaggaccacag
ggagagaccggatccaggggggcacctggaaaaccaggaccgatgggattccaaggagag
caaggctttccaggggttgctggaaagactggtgttcctggcaaactggctagtgagcag
cacatcagagaactgtgtggctccatgattgatgatcagatagctcagctcgctgctaac
ctgagaagacctctggctcctggtgctgtgggacggcctggaccaccggggcctccagga
aaacaaggggaagttggatccattggtcaccctggatccctcggcccaccaggttataga
ggactgccaggagatctcggtgatcctggtcctcgaggagatgttggtgaaccaggtgat
aaggggcctgttggtaaagcaatcgaagggcccactggagaccagggtgacccgggtctg
cccggcgtgcatggcatcgtcaaagacggccgtgacggagcacctggagatccaggagaa
gcaggagaagcaggacgagccggcagaccgggacaccagggatcacctggaatctgtgac
acatcagcgtgccaaggagcagtggttcacgggaagtcctccaaccctaagaaccattaa
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