Carassius gibelio (silver crucian carp): 127945906
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Entry
127945906 CDS
T08819
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127945906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgib03041
]
127945906
03009 Ribosome biogenesis [BR:
cgib03009
]
127945906
Enzymes [BR:
cgib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127945906
Spliceosome [BR:
cgib03041
]
Complex A
U1 snRNP components
U1 related factors
127945906
Complex B
127945906
Ribosome biogenesis [BR:
cgib03009
]
Eukaryotic type
Pre-60S particles
Helicases
127945906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127945906
NCBI-ProteinID:
XP_052397993
LinkDB
All DBs
Position
A3:complement(9814290..9819282)
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AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRGSYNSGPPRFGGSRGGPPPGKKFGNPGERLRKKHWNLDELQKFEKNF
YQEHPEVSRRSIQDVEHYRRTKEITVKGRDCPKPIVKFHESNFPNYVMDVIGKQNWTDPT
PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGEGPICLVLAPTRE
LAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKRRCDDLT
RSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDIKFVINYDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDR
GGRSRGGRGGGYRDDRRDRHSGGRRDFNSYGQDNRNSDSYGQKKVFGNKTQNGSSGYNSS
NSFNAGYSNNGQGNFGSQSGGYGNQGYQSQQFAPNPAPVQNSMNHPPPFPFNPQQMPQTM
PFPMAPPTFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggtcgtgacagaggtagttacaatagtggcccc
ccgcgctttggaggcagcagaggtggacctcctccgggcaagaagtttgggaatcctgga
gaacgtctgcggaagaagcactggaacctggatgagctccagaagtttgagaagaacttc
taccaggagcatcctgaagtttctcggaggtcaattcaagatgttgaacactacagaaga
accaaggagatcaccgtgaagggtcgagactgtcccaaacccattgtaaaattccatgaa
tcaaactttccaaactatgtgatggatgtgattggtaaacagaactggactgatccgact
cctatccaggctcaggggtggccagttgcactgagtggaaaagatatggttggcattgca
cagaccggctctggaaaaacactctcgtatctgcttcccgctattgttcacataaaccac
caaccattcctggagcgaggtgaaggtcccatttgcttggtgttggcacccacccgtgaa
ttggcgcagcaggtccagcaggtggcggcagagtacggcaaagcttctcgtctcaagtcc
acctgcatatacggaggcgctcccaaaggaccacagatccgggacctggaaaggggtgtc
gagatttgtatcgccacacccggaagacttattgatttccttgaagttggaaagacaaat
ctgcgcagatgcacgtatcttgtgctcgacgaagctgaccggatgcttgacatgggattt
gaacctcagattcgaaaaatcttggaccaaattagaccggaccgacagactcttatgtgg
agtgctacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgta
cagatcaacgtcggcgctctgcagctcagcgccaaccacaacatcctacagattgtcgac
gtttgcaatgatggcgaaaaagaagacaaactgatgcgtctgctggaggaaatcatgagc
gagaaggagaacaagaccattatttttgtggagaccaagagaaggtgtgacgatctcacc
aggagcatgcgtagggatggatggccagcaatgggcatccatggagacaagagtcagcag
gaaagagactgggtgctcaatgagttcaaatatggcaaagcgcccatcctcattgccaca
gatgttgcctccagaggactagatgtggaggacatcaaatttgtcattaactatgactac
cccaacaattctgaggactacattcaccgcattggccgtacggctcgcagtcagaaaacc
ggcacagcctacactttctttacacccaacaacatgaaacaggctcacgacctcgtctcg
gtcctccgcgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacaga
ggaggtcgttccaggggaggtcgaggtggagggtatagggatgaccgccgcgatcgccac
tctggcggcaggcgggacttcaacagctacggccaggataaccgtaacagtgactcttac
gggcaaaagaaggtatttggaaataaaactcaaaacggatctagcggttacaacagcagt
aacagctttaacgcgggttacagcaataacggacagggtaacttcggcagtcagtctggt
gggtacggaaaccaaggctatcagagccagcagtttgcaccaaacccagctcctgttcag
aacagcatgaaccaccctccaccgttccccttcaacccccagcagatgccacagaccatg
ccgttccccatggctcctcccacattccctcagtaa
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